TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242538|gb|AFNH01001896.1| Gregarina niphandrodes asmbl.268... 33 0.23 gi|338242644|gb|AFNH01001843.1| Gregarina niphandrodes asmbl.263... 31 0.88 gi|338242475|gb|AFNH01001927.1| Gregarina niphandrodes asmbl.270... 30 2.5 gi|338240755|gb|AFNH01002788.1| Gregarina niphandrodes asmbl.350... 29 3.3 gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.328... 29 4.3 gi|338240793|gb|AFNH01002769.1| Gregarina niphandrodes asmbl.348... 28 9.7 gi|338240995|gb|AFNH01002669.1| Gregarina niphandrodes asmbl.339... 28 9.7 gi|338241618|gb|AFNH01002356.1| Gregarina niphandrodes asmbl.310... 28 9.7 gi|338242339|gb|AFNH01001995.1| Gregarina niphandrodes asmbl.277... 28 9.7 >gi|338242538|gb|AFNH01001896.1| Gregarina niphandrodes asmbl.2680, whole genome shotgun sequence Length = 56005 Score = 33.1 bits (74), Expect = 0.23 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +1 Query: 170 IDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILC 219 +D C +S F P+VIE ++EG L AV +++ G +HI C Sbjct: 12433 VDDTLCVQS-----FLPLVIEPIIEGPSFLQTLAAVSR*VRQTGTQHIYC 12567 >gi|338242644|gb|AFNH01001843.1| Gregarina niphandrodes asmbl.2631, whole genome shotgun sequence Length = 15960 Score = 31.2 bits (69), Expect = 0.88 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 350 TQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK 386 TQLK+ + H R +PHNP + + +G HDK Sbjct: 8305 TQLKR*DQRHGPRYWTSPHNPGNAVAANQNGEGRHDK 8195 >gi|338242475|gb|AFNH01001927.1| Gregarina niphandrodes asmbl.2708, whole genome shotgun sequence Length = 11466 Score = 29.6 bits (65), Expect = 2.5 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 13/120 (10%) Frame = -2 Query: 351 QLKKLAEAHNERLLQTPHNPISLAMTLKT--IDGHHDKAVTQLGSMLFTRQVSGARAVPL 408 Q L E RLL TP + + K +G D + + L T A+A P Sbjct: 11132 QCLTLEEPAVRRLLGTPRSYLDTGECDKEGLKEGEEDVCLDGVDRCLGT-----AQAAPE 10968 Query: 409 GNVQTVSGHTF-----------RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKC 457 + Q G F RGF C+Y++ AA+ DVD F +L+KC Sbjct: 10967 TDAQAGPGMAFSAGPRFLLDWLRGFCEI--ELDCSYVSTTAALSGGFADVDAFRTKLEKC 10794 >gi|338240755|gb|AFNH01002788.1| Gregarina niphandrodes asmbl.3505, whole genome shotgun sequence Length = 22975 Score = 29.3 bits (64), Expect = 3.3 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = +1 Query: 36 LEQGKCPEDGWDESTLELFLHELAVMDSNNF 66 ++ G C +D W ++ E + + MD NN+ Sbjct: 21157 IDHGPCDDDNWTQAAFETIQNTIVNMDPNNY 21249 >gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.3288, whole genome shotgun sequence Length = 45373 Score = 28.9 bits (63), Expect = 4.3 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 32 IRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNC 70 + L L KCP +++ +H + M+S NF+GNC Sbjct: 40470 LNLYLHLAKCPHG----PSVKFQVHNIHTMESVNFIGNC 40366 >gi|338240793|gb|AFNH01002769.1| Gregarina niphandrodes asmbl.3488, whole genome shotgun sequence Length = 7190 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = +3 Query: 440 IGMKMQDVDLFIKRLDKCL-NIVRKEQTRASVVS 472 +G +D+F++R D+C+ +IVR+ AS++S Sbjct: 6651 VGSVFATLDMFLRRFDECVTDIVRRTALYASILS 6752 >gi|338240995|gb|AFNH01002669.1| Gregarina niphandrodes asmbl.3393, whole genome shotgun sequence Length = 5734 Score = 27.7 bits (60), Expect = 9.7 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%) Frame = +3 Query: 168 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACF 227 P + K ++ A +P+V + + +R KA EA IQ++ + I+ S+ F Sbjct: 3738 PAANVKPVDLELLDANTKPIVTKPYVFPAGIRD--KADEA-IQDMLKQGIITQSSSPWAF 3908 Query: 228 APRVPDRLEELAVICANYDIP---HVVNNAYGLQS-SKCMHLIQQGARVGRID 276 PR+ ++ IC NY IP + N+Y L + + + L+ QG ++D Sbjct: 3909 RPRLVFHPDKPVRICGNY-IPLNTLLKGNSYPLPNMEEMLQLLAQGKYFAKVD 4064 >gi|338241618|gb|AFNH01002356.1| Gregarina niphandrodes asmbl.3100, whole genome shotgun sequence Length = 6792 Score = 27.7 bits (60), Expect = 9.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -1 Query: 77 GRVASALVARRHYRFIHGIGRS 98 GR+ L RHY+ +HG+GR+ Sbjct: 1800 GRLCPHLPVPRHYQVVHGLGRA 1735 >gi|338242339|gb|AFNH01001995.1| Gregarina niphandrodes asmbl.2770, whole genome shotgun sequence Length = 30258 Score = 27.7 bits (60), Expect = 9.7 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%) Frame = -1 Query: 168 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACF 227 P + K ++ A +P+V + + +R KA EA IQ++ + I+ S+ F Sbjct: 29229 PAANVKPVDLELLDANTKPIVTKPYVFPAGIRD--KADEA-IQDMLKQGIITQSSSPWAF 29059 Query: 228 APRVPDRLEELAVICANYDIP---HVVNNAYGLQS-SKCMHLIQQGARVGRID 276 PR+ ++ IC NY IP + N+Y L + + + L+ QG ++D Sbjct: 29058 RPRLVFHPDKPVRICGNY-IPLNTLLKGNSYPLPNMEEMLQLLAQGKYFAKVD 28903 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,282,329 Number of Sequences: 3680 Number of extensions: 141136 Number of successful extensions: 686 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 384 Number of HSP's successfully gapped in prelim test: 36 Number of HSP's that attempted gapping in prelim test: 271 Number of HSP's gapped (non-prelim): 486 length of query: 504 length of database: 5,120,956 effective HSP length: 99 effective length of query: 405 effective length of database: 4,756,636 effective search space: 1926437580 effective search space used: 1926437580 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)