TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...   451   e-127

>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score =  451 bits (1159), Expect = e-127
 Identities = 231/438 (52%), Positives = 314/438 (71%), Gaps = 18/438 (4%)
 Frame = +3

Query: 40      KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSG 99
               K P  G+++  +EL L+E+++MDSNNF+ N GVGEREGR+ S LV +RHY F HGIGRSG
Sbjct: 3095904 KLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSG 3096083

Query: 100     DISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH--SVASCFVVPMATGMSLTLCFLTLRH 157
               DI+  QPKAAGSSL+ K+T+SLVL+ +KLAG+   S+++C ++PMATGM+L L  LTL+ 
Sbjct: 3096084 DITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCLLLPMATGMTLALTMLTLKS 3096263

Query: 158     KRPKAK-YIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH 216
                    K Y++WPRIDQKSC KS++TAG  P+VI N L+GD +RTDL A+E KI+ELG ++
Sbjct: 3096264 INANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIRTDLVAIEDKIKELGVDN 3096443

Query: 217     ILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID 276
               ILC+ STT+CFAPRVPD++ E++ IC  Y+I H++NNAYGLQ SK +H I Q  ++GR+D
Sbjct: 3096444 ILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKILHNISQACKLGRVD 3096623

Query: 277     AFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRK 336
               AF+QS DKNFMVPVGGAII+G N  FI  IS+ YPGRA++SP LDV ITLLS+G  G+  
Sbjct: 3096624 AFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQGWLN 3096803

Query: 337     LLKERKEMFVYLSTQLKKLAEAHNERLLQT-PHNPISLAMTLKTIDGHHDKAV------- 388
               LLKERKE+ +Y + QL K A  +NE+LL T   N IS A+TL + + ++++ +       
Sbjct: 3096804 LLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFALTLSSNNFNNNEEIISNNNNN 3096983

Query: 389     -----TQLGSMLFTRQVSGARAVPLGNVQ--TVSGHTFRGFMSHADNYPCAYLNAAAAIG 441
                    + +GS LF+R  SG+R + L + +   + G  F  + SH DNY  +YL  A AIG
Sbjct: 3096984 NNNTFSMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHIDNYSTSYLTVACAIG 3097163

Query: 442     MKMQDVDLFIKRLDKCLN 459
               +   ++D FI+RL K  N
Sbjct: 3097164 ITKLEIDTFIQRLSKLFN 3097217


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,746,430
Number of Sequences: 6
Number of extensions: 177976
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 179
length of query: 504
length of database: 11,314,357
effective HSP length: 105
effective length of query: 399
effective length of database: 11,313,727
effective search space: 4514177073
effective search space used: 4514177073
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)