TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig1068 | | 1 to 155071 316 3e-86 Cf_Contig606 | | 1 to 135677 35 0.15 Cf_Contig857 | | 1 to 61726 33 0.45 Cf_Contig991 | | 1 to 48311 33 0.76 Cf_Contig1069 | | 1 to 371363 31 2.9 Cf_Contig1012 | | 1 to 160251 30 3.8 Cf_Contig704 | | 1 to 47249 30 3.8 Cf_Contig1053 | | 1 to 375645 30 4.9 Cf_Contig912 | | 1 to 41032 29 8.4 Cf_Contig872 | | 1 to 88823 29 8.4 >Cf_Contig1068 | | 1 to 155071 Length = 155071 Score = 316 bits (810), Expect = 3e-86 Identities = 206/541 (38%), Positives = 284/541 (52%), Gaps = 87/541 (16%) Frame = -3 Query: 1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60 M+ E VS Y+ G E+ +A +R L+ Q +CP+ G ++ ++L L +LA Sbjct: 18872 MDERGLQLAEDLVSAHYLAAGRESLQATARTLRSLIAQRRCPDVGLSDAVIQLLLRQLAA 18693 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRVASALV +RH+ F HGIGRSGD+++ QPKAAGSSLL K+TN Sbjct: 18692 MDTNNFAAHVGGGEREGRVASALVRQRHFDFTHGIGRSGDLASEQPKAAGSSLLYKLTNI 18513 Query: 121 LVLNVIKLAGVHSVASCFVVPMATGMSLTL---CFLTLRHK------------------- 158 +VL++I+LAG S A+ VVPMATGM+L L C R K Sbjct: 18512 MVLDLIRLAGAPSTAAAVVVPMATGMTLALVLRCVAKTRVKEVDAQQQTAATTTGTTASP 18333 Query: 159 RPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIE------------NVLEGDE--------- 197 R +Y++WPRIDQK+ K + +AG P+ +E DE Sbjct: 18332 RVTPRYVVWPRIDQKTALKCIDSAGLLPLPVELRPAPPLTRSSAEASSTDEGGPAASSSS 18153 Query: 198 --LRTDLKAVEAKIQEL-GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNA 254 L D++ + A I + GP H++C+ STT+CFAPR+PD +A C + IP+VVNNA Sbjct: 18152 LFLHCDVEDIAATINAVGGPAHVVCVLSTTSCFAPRLPDNTVAIARYCKEHAIPYVVNNA 17973 Query: 255 YGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRA 314 YG+QS + M I R+GR+D VQS DKNF+VPVGGA++ + + +Y GRA Sbjct: 17972 YGVQSRRIMTRIDAAQRLGRVDYVVQSSDKNFLVPVGGAVVTSSSAERCNAAAALYAGRA 17793 Query: 315 SASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL---------- 364 SASP +D+ IT LSLG G ++L ER L QL A+A E +L Sbjct: 17792 SASPIIDLFITALSLGRRGMQELWAERYRCRRRLVDQLCGFAKARGEVVLVDDGEGALSG 17613 Query: 365 ----------------------QTPHNPISLAMTLK------TIDGHHDKAVTQLGSMLF 396 Q P N IS+A+T++ + D A LG+ LF Sbjct: 17612 EEDAPAAAGTQAKDKKQQQQQQQQPRNDISVAVTMRHFGAAASDDDTTWSAARALGAQLF 17433 Query: 397 TRQVSGARAVPLG--NVQTVSGHTFRGFMSHADNYP-CAYLNAAAAIGMKMQDVDLFIKR 453 R V+G R V V ++G F + H + P C L A IGM M +V+ ++R Sbjct: 17432 RRAVTGPRVVVPAPRTVTKIAGCDFHNYGMHQEGTPACPLLVVACGIGMTMAEVEGLMER 17253 Query: 454 L 454 L Sbjct: 17252 L 17250 >Cf_Contig606 | | 1 to 135677 Length = 135677 Score = 35.0 bits (79), Expect = 0.15 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Frame = -3 Query: 240 VICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNF--MVPVGGAIIAG 297 V NYDIPH+ NA ++ S+ I++G + + + ++ + +V GA G Sbjct: 13179 VAAKNYDIPHITRNAVPVEPSQIAEFIKRGEDMSKAEVTFHAMQAVYRQLVVEYGATFGG 13000 Query: 298 F------NEPFIQDISKMY--PGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS 349 EP ++ S ++ G+ + VL+TLL + +E++ ++ + Sbjct: 12999 LLKSILRTEPSAENASLIHCTGGKDRTGWAAYVLLTLLDIN-------EEEKRTDYLLTN 12841 Query: 350 TQLKKLAEAHN 360 T ++ A A N Sbjct: 12840 TYFQRPATAFN 12808 >Cf_Contig857 | | 1 to 61726 Length = 61726 Score = 33.5 bits (75), Expect = 0.45 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Frame = +3 Query: 322 VLITLLSLGCSGYRKLL--KERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKT 379 V + +++G R+L +ER+E + QL+ E+H E+LLQ+ HN ++ L Sbjct: 3459 VPVLAITIGIVALRQLRVQRERREFAERYAKQLRAARESH-EQLLQSGHNASQRSLDLSE 3635 Query: 380 IDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTV 414 D D A + +++ + A A+ G V T+ Sbjct: 3636 ADVDEDGAAVR---VIYGTESGNAEALAKGFVTTL 3731 >Cf_Contig991 | | 1 to 48311 Length = 48311 Score = 32.7 bits (73), Expect = 0.76 Identities = 27/94 (28%), Positives = 39/94 (41%) Frame = -2 Query: 16 AYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGER 75 A VR G + + A E + + G ST L LH++AV +CGVG R Sbjct: 22846 ATVRAGQQRQHAQEESALRIEQCG---------STRHLVLHQVAVQQVQQRKRSCGVGSR 22694 Query: 76 EGRVASALVARRHYRFIHGIGRSGDISAVQPKAA 109 GR L + + IG G ++ + AA Sbjct: 22693 RGR-GQRLQQEGRHASLRDIGSEGHLNLHKTDAA 22595 >Cf_Contig1069 | | 1 to 371363 Length = 371363 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 417 HTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 462 H++ G SH C +LN+ ++ + + V LFI CL+ R Sbjct: 365179 HSYTGTTSHTHT*ICTHLNSCHSLSLPSRRVSLFIHTTRPCLSAER 365316 Score = 29.6 bits (65), Expect = 6.4 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -3 Query: 153 LTLRHKRPKAKYIIWPRIDQKSC 175 LT H RP A++++WP + C Sbjct: 222237 LTQTHSRPAARFVVWPGVQSLRC 222169 >Cf_Contig1012 | | 1 to 160251 Length = 160251 Score = 30.4 bits (67), Expect = 3.8 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Frame = +1 Query: 24 ARRAHEHLIRLLLEQGKCPEDGW---DESTLELFLHELAVMDSNNFLGNCGVGEREGRVA 80 AR H++ +L G + G + LE +H LA +++ + + N ++GRVA Sbjct: 117754 AREVGAHVVLQVLRDGALAQRGRGIRNAHVLEELVHLLAELEAMDEVAN-----KDGRVA 117918 Query: 81 SALVARR--HYRFIHGIGRS 98 SA ARR + G+GR+ Sbjct: 117919 SAAQARRDGELEGLDGVGRA 117978 >Cf_Contig704 | | 1 to 47249 Length = 47249 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Frame = +2 Query: 108 AAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRH-------KRP 160 AAG ++IT S+ L+ A S S P A M L +C + +RP Sbjct: 45041 AAGRRCSSRITTSVKLSTKSFAARASTRSSVRSPAALTMPLRICRTGIVSSLSSS*VRRP 45220 Query: 161 KAK--YIIWPRIDQKSCFKSMVT 181 K +I WPR ++SC + T Sbjct: 45221 KQPITFIRWPRNTKQSCPSRLFT 45289 >Cf_Contig1053 | | 1 to 375645 Length = 375645 Score = 30.0 bits (66), Expect = 4.9 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Frame = -1 Query: 312 GRASASPSLDVLITLLS--LGCSGYRKL-----LKERKEMFVYLSTQLKKLAEAHNER-- 362 G +A L +L+ LL+ + S + K+ +KE KE Y S K + H ER Sbjct: 345240 GEKNAQLFLSILLLLLNFFIFLSFFYKVVSEHEIKETKERKRYKSLVQLKEVKGHEERAR 345061 Query: 363 --LLQTPHNPISLAMTLKTID 381 L +TPHNP T ID Sbjct: 345060 TYL*RTPHNPARTCHTQTVID 344998 >Cf_Contig912 | | 1 to 41032 Length = 41032 Score = 29.3 bits (64), Expect = 8.4 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%) Frame = -2 Query: 70 CGVGEREGRVASALVARRHY----------RFIHGIGRSGD-ISAVQPKAAGSSLLNKIT 118 CGVGE + R +A +RR Y R + G GR G +A P+AAG++ + + Sbjct: 9669 CGVGEEDTRRGAATHSRRVYVSVVDHLWRRRRVAGPGRGGGWHAACAPQAAGAAAVQRAG 9490 Query: 119 NSLVL 123 L L Sbjct: 9489 KMLRL 9475 >Cf_Contig872 | | 1 to 88823 Length = 88823 Score = 29.3 bits (64), Expect = 8.4 Identities = 23/83 (27%), Positives = 31/83 (37%) Frame = +2 Query: 8 AGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFL 67 AG R + A+ GC A R +G CP DE + + A + Sbjct: 16085 AGRCRSAAAHTSAGCRADRRR---------RGLCPRGAGDEHDGDGAVLRGAGQWRDAVR 16237 Query: 68 GNCGVGEREGRVASALVARRHYR 90 G+C G EG +RRH R Sbjct: 16238 GSCHRGADEGAAGGVHASRRHLR 16306 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,369,721 Number of Sequences: 1089 Number of extensions: 370117 Number of successful extensions: 2300 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 67 Number of HSP's that attempted gapping in prelim test: 1927 Number of HSP's gapped (non-prelim): 896 length of query: 504 length of database: 12,349,441 effective HSP length: 106 effective length of query: 398 effective length of database: 12,234,007 effective search space: 4869134786 effective search space used: 4869134786 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)