TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847390|gb|ADNL01003213.1| Astrammina rara contig02625, who...    24   5.5  
gi|330848074|gb|ADNL01002529.1| Astrammina rara contig03000, who...    24   5.5  
gi|330848610|gb|ADNL01001993.1| Astrammina rara contig02371, who...    24   5.5  
gi|330848350|gb|ADNL01002253.1| Astrammina rara contig02689, who...    24   7.2  

>gi|330847390|gb|ADNL01003213.1| Astrammina rara contig02625, whole
            genome shotgun sequence
          Length = 13634

 Score = 24.3 bits (51), Expect = 5.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 398  RQVSGARAVPLGNVQTVSGHTFRG 421
            ++VSG   +P+G++  + GH+  G
Sbjct: 9169 QEVSGVPGIPMGHIVLLRGHSDTG 9240


>gi|330848074|gb|ADNL01002529.1| Astrammina rara contig03000, whole
            genome shotgun sequence
          Length = 3224

 Score = 24.3 bits (51), Expect = 5.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 145  GMSLTLCFLTLRHKRPKAKYIIWPR 169
            G  +T C+  LRH RP+   +++ R
Sbjct: 2618 GYHVTTCYDRLRHNRPEPFTVVFAR 2692


>gi|330848610|gb|ADNL01001993.1| Astrammina rara contig02371, whole
           genome shotgun sequence
          Length = 178

 Score = 24.3 bits (51), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 131 VHSVASCFVVPMATGMS---LTLCFLTLRHKRPKAKYIIW 167
           +HS  S  V P++TGM     TLC + L  +R   +Y ++
Sbjct: 120 IHSPISSAVRPLSTGMPDTVTTLCDVYLFPRRTYERYSLY 1


>gi|330848350|gb|ADNL01002253.1| Astrammina rara contig02689, whole
            genome shotgun sequence
          Length = 4647

 Score = 23.9 bits (50), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 101  ISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSV 134
            +  V+PK A +  +NK   S+ +N+I  A  H V
Sbjct: 1951 VGDVEPKVAAALAMNKNKGSIKINIIP-APTHGV 2049


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 801,716
Number of Sequences: 3231
Number of extensions: 10375
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of query: 504
length of database: 483,365
effective HSP length: 78
effective length of query: 426
effective length of database: 231,347
effective search space: 98553822
effective search space used: 98553822
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)