TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325190277|emb|FR824302.1| Albugo laibachii Nc14, genomic cont...    31   2.5  
gi|325191909|emb|FR824414.1| Albugo laibachii Nc14, genomic cont...    31   2.5  
gi|325181342|emb|FR824060.1| Albugo laibachii Nc14, genomic cont...    30   4.3  

>gi|325190277|emb|FR824302.1| Albugo laibachii Nc14, genomic contig
            CONTIG_257_NC14_v4_37389_223
          Length = 37389

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = -1

Query: 177  KSMVTAGFEPVVIENVLEGDELRTDLKAVEA--KIQELGPEHILCLHSTTACFAPR---- 230
            ++ +T  FEP++ + +  GD+   +++ V A  KI     + +    S T+ FA R    
Sbjct: 5862 RTPITRAFEPIMRKRICNGDKQNEEMRPVPARSKIDAEQKKELHSKSSLTSMFAIRTKNS 5683

Query: 231  VPDRLEELAVICANYDIP 248
             P RL + A++     IP
Sbjct: 5682 APTRLSQPAIVKPLRSIP 5629


>gi|325191909|emb|FR824414.1| Albugo laibachii Nc14, genomic contig
             CONTIG_369_NC14_v4_23412_348
          Length = 23412

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%)
 Frame = -3

Query: 304   QDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL-------- 355
             Q I  +YPG    SP+  +L T         +KL KE + +  +L +  K +        
Sbjct: 16123 QHIEYLYPGSYPTSPTQRLLWT---------KKLRKEARIVLTHLLSDCKTIWLCKKIQR 15971

Query: 356   ------------AEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGA 403
                          ++ +E  + TP+  I   +   T  GHHD       ++L  R ++  
Sbjct: 15970 LPDTICTQHIEYLKSSSEEAVDTPYKRIPDELWPPTYPGHHDHYDFDNRAVLLVRFMAEE 15791

Query: 404   RAVPLGNVQTVSGHTFRGFMSHADNYPCAY 433
              A  +  +   S     GF + AD  P  Y
Sbjct: 15790 AATCIRCLVLYS----EGFFAFADGNPIRY 15713


>gi|325181342|emb|FR824060.1| Albugo laibachii Nc14, genomic contig
              CONTIG_15_NC14_v4_212178_206
          Length = 212178

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 202    LKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS-S 260
              L   ++  Q+LGP   L  H    C    +P R+     I A    PH +  + GLQS S
Sbjct: 200254 LSRFQSSEQQLGPS--LTKHPVPHCMIILLPARVRSTT*IRAWVVSPHRMEQSLGLQSAS 200427

Query: 261    KCMHLIQ 267
              +CM +++
Sbjct: 200428 RCMVIVR 200448


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,178,394
Number of Sequences: 3816
Number of extensions: 262958
Number of successful extensions: 1244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 681
length of query: 504
length of database: 10,913,379
effective HSP length: 104
effective length of query: 400
effective length of database: 10,516,515
effective search space: 4206606000
effective search space used: 4206606000
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)