TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                      163   2e-40
T.congo.pschr.9                                                        33   0.46 

>T.congo.pschr.11
          Length = 4797796

 Score =  163 bits (412), Expect = 2e-40
 Identities = 92/213 (43%), Positives = 125/213 (58%), Gaps = 27/213 (12%)
 Frame = -3

Query: 6       AYALAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSN 65
               A  LAE +V   YI  G ++     + V S+L++RR P +G +D +IE  L + AMMD+N
Sbjct: 3680396 ALHLAESIVEPRYIQAGVESQRSVERTVRSILAQRRCPDEGLNDCAIELLLHQIAMMDTN 3680217

Query: 66      NFLDNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVAD 125
               NF  +VG GERE RV S LV RR++NL HG+GRSGD+ ++QPKAAGSSLL KLTN +V D
Sbjct: 3680216 NFTAHVGAGEREGRVASTLVQRRYYNLTHGVGRSGDICSDQPKAAGSSLLYKLTNHMVLD 3680037

Query: 126     AMRIAGLEDMGPALVLPLATGMTLTLVLLAVKSKR------------------------- 160
                +R AG   +  A V+P+ATGMT++LVL ++   R                         
Sbjct: 3680036 LLRQAGTPSLASAAVIPMATGMTISLVLRSIAHHRDQETRTRATEAAVDDQRRSDCGATS 3679857

Query: 161     --PKTATKVVWCRLDQKTCVKAVLSAGLELVVV 191
                 P     V+W R+DQKT +K +  +G   VVV
Sbjct: 3679856 VAPVAPRFVIWTRVDQKTALKCIELSGFIPVVV 3679758



 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 75/240 (31%), Positives = 106/240 (44%), Gaps = 36/240 (15%)
 Frame = -1

Query: 259     VQATALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRA 318
               VQ+ ++ + +  A R GRVDA+VQS DKNF+VPVGGAV+  G+  TE+  A    Y GRA
Sbjct: 3679570 VQSRSIMQRIDAAIRLGRVDAIVQSGDKNFLVPVGGAVLSGGR--TEVARAT-SLYAGRA 3679400

Query: 319     SISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYMRTKLGECVGEFGERLLD--------- 369
               S SPV+DL IT LS+G  G+QR  + R  +   +  +L +      E LLD         
Sbjct: 3679399 SASPVVDLFITALSLGRSGFQRLWDARYFLRELLEQRLRDFARAREETLLDEFDPQGDMH 3679220

Query: 370     ------TPGNPISIGVSLETHAKLSED----GKDVSF---------------FGSMLFSR 404
                     +     S G+S  T  +  +       D+SF                G+ LF  
Sbjct: 3679219 GVHDDGSCNRHNSSGLSAATDTRRGDAKYALRNDISFAITMRNIGGPSEAAAVGARLFRG 3679040

Query: 405     CVSGTRVVAPGKRQXXXXXXXXXXXASH--DAYPVPYFTAAAALGTTREDVDRFCAQLRK 462
                V+G RVV P + +             H  D    P    A  +G   ED +    +L +
Sbjct: 3679039 AVTGPRVVLPNEEKISLCGHLFRNYGMHTDDTPACPLLVLACGVGMKIEDAEGLMKRLEE 3678860


>T.congo.pschr.9
          Length = 2092392

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = -3

Query: 70    NVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQP-------KAAGSSLLNKLTNLL 122
             N G   R+  +    VA+  WN+  G+GR  ++  +QP       K  G + +  L N++
Sbjct: 59848 NKGNNSRQL*LIKKSVAKERWNVEEGVGRRKEI*KQQPELAR*S*KGKGMNRIKMLCNIV 59669

Query: 123   VADAM 127
               D +
Sbjct: 59668 CVDVV 59654


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,265,598
Number of Sequences: 11
Number of extensions: 184470
Number of successful extensions: 775
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 244
length of query: 498
length of database: 7,429,315
effective HSP length: 102
effective length of query: 396
effective length of database: 7,428,193
effective search space: 2941564428
effective search space used: 2941564428
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)