TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.837 of Sphaeroforma arctica JP610                          117   9e-26

>supercont1.837 of Sphaeroforma arctica JP610
          Length = 39100

 Score =  117 bits (292), Expect = 9e-26
 Identities = 59/120 (49%), Positives = 84/120 (70%)
 Frame = -3

Query: 269   TKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLI 328
             ++A R GRVDA VQSTDKNF+VPVGG+V+     + ++ D V K+YPGRAS +P LD+ I
Sbjct: 21311 SQAMRLGRVDAYVQSTDKNFLVPVGGSVIAGPDKHLKVAD-VCKTYPGRASGTPTLDVFI 21135

Query: 329   TLLSMGSHGWQRCLEDRGDVYGYMRTKLGECVGEFGERLLDTPGNPISIGVSLETHAKLS 388
             TLLSMGS+G++  L  R ++Y  ++ K+ E   + GERLL TP NPIS+ +++    + S
Sbjct: 21134 TLLSMGSNGYKHRLLQRKEIYEILKQKMSEVAAKHGERLLHTPHNPISLAITITPRRRAS 20955



 Score =  107 bits (268), Expect = 6e-23
 Identities = 52/101 (51%), Positives = 74/101 (73%)
 Frame = -1

Query: 91    NLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGPALVLPLATGMTLT 150
             ++ HGIGRSGD++A QPKAAGSSL++KLT   + + ++++G        V PLATGM + 
Sbjct: 22585 SMGHGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGATRTKSCYVFPLATGMAVV 22406

Query: 151   LVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVV 191
             + LLA+K+K P TAT VVW R+DQKTC+KA+++ G   VV+
Sbjct: 22405 MCLLALKAKNP-TATHVVWPRIDQKTCLKAIVATGFIPVVI 22286



 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = -3

Query: 221   CVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTK 270
             CV+++TSCFAPRA D  S++A MC  L + HVVNNAYGV ++ +   V +
Sbjct: 21671 CVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNAYGVTSSLIMHHVNE 21522



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 28/54 (51%), Positives = 36/54 (66%)
 Frame = -1

Query: 36    LLSERRLPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVARRH 89
             L  +RRLP  GWDD +I+ FL + ++MDSNNF +  G GERE R+ S LV   H
Sbjct: 23374 LCIQRRLPVGGWDDATIKLFLQDLSLMDSNNFNEYSGAGEREGRIESSLVRDMH 23213



 Score = 54.3 bits (129), Expect = 7e-07
 Identities = 31/73 (42%), Positives = 40/73 (54%)
 Frame = -3

Query: 390   DGKDVSFFGSMLFSRCVSGTRVVAPGKRQXXXXXXXXXXXASHDAYPVPYFTAAAALGTT 449
             D  DV+  G+MLF R VSG RVV+    +           A  DAY  PY T AAALG T
Sbjct: 20537 DATDVTRLGAMLFRRGVSGARVVSADDVKVVAGVSFKGYGAHADAYFTPYLTVAAALGMT 20358

Query: 450   REDVDRFCAQLRK 462
             R+DV++   ++ K
Sbjct: 20357 RKDVEQVVERIDK 20319


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,643,801
Number of Sequences: 15618
Number of extensions: 870890
Number of successful extensions: 2830
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 1296
length of query: 498
length of database: 40,529,447
effective HSP length: 113
effective length of query: 385
effective length of database: 38,764,613
effective search space: 14924376005
effective search space used: 14924376005
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)