TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_58                                                      237   1e-99
PHYCAscaffold_84                                                       33   0.99 
PHYCAscaffold_364                                                      30   8.4  

>PHYCAscaffold_58
          Length = 327658

 Score =  237 bits (604), Expect(2) = 1e-99
 Identities = 128/250 (51%), Positives = 167/250 (66%), Gaps = 7/250 (2%)
 Frame = -3

Query: 8      ALAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNF 67
              ALAE L+   Y+ QG  A   R  LVT+LL++RRLP +GWDD S+E  L   + MDSNNF
Sbjct: 326840 ALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEGWDDASVEMLLQTLSAMDSNNF 326661

Query: 68     LDNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAM 127
                + G GEREARV+SP+VARRH+ LAHG+GRSGDVAA QPKAAGSSLL +L N L  D +
Sbjct: 326660 QGSAGAGEREARVFSPMVARRHFRLAHGVGRSGDVAAVQPKAAGSSLLVQLANSLAKDVL 326481

Query: 128    RIAGLEDMGPALVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLE 187
              R+AG+  +  ALVLP+ATGM+LTLVLL +   +P  A  V+W R+DQK+C K++L+AGL 
Sbjct: 326480 RLAGMRAVQAALVLPVATGMSLTLVLLQLNELKP-GAHYVIWPRIDQKSCFKSILAAGLT 326304

Query: 188    LVVVSPKLV-------GDQLCTDLDXXXXXXXXXXXXXXCCVVTSTSCFAPRAGDACSDV 240
               +V+   LV       G  L TDL                 V+++TSCFAPRA D+  ++
Sbjct: 326303 PLVLPNVLVEEEDGRLGGYLKTDLAGMAELIDQYGADSILAVMSTTSCFAPRAYDSVQEI 326124

Query: 241    AKMCAELDVG 250
              AKMC + ++G
Sbjct: 326123 AKMCQDRNIG 326094



 Score =  147 bits (370), Expect(2) = 1e-99
 Identities = 105/288 (36%), Positives = 137/288 (47%), Gaps = 76/288 (26%)
 Frame = -1

Query: 251    HVVNNAYGVQATALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAV 310
              HV+NNAYGVQA+    EV  A R GRVDAVVQS DKNFMVPVGGA+VCS   + ++VD V
Sbjct: 326020 HVINNAYGVQASKCVHEVELAMRVGRVDAVVQSLDKNFMVPVGGAIVCSA--SRDLVDRV 325847

Query: 311    RKSYPGRASISPVLDLLITLLSM----------------------GSHGWQRCLEDRGDV 348
               K YPGRAS +P LD  IT+L M                      G  G+++ L++R  +
Sbjct: 325846 AKFYPGRASATPTLDFFITMLQMVSSPEIHVI*LLSSSSQLVCYQGKSGYRQLLDERKHL 325667

Query: 349    YGYMRTKLGECVGEFGERLLDTPGNPISIG-----------VSLETHAKLS--------- 388
                YMR KL     E GER+L    N + +G           ++L+  A++S         
Sbjct: 325666 AVYMREKLESLAAEEGERVLRVSSNEVLVGCVLEWLGISAFLTLKCCAQISFALTLGTLC 325487

Query: 389    -------EDGKDVSFFGSMLFSRCVSGTR---------------------------VVAP 414
                     E  + ++F GSMLFSR VSG R                           VV+ 
Sbjct: 325486 SDVMDKKEKSQQLTFLGSMLFSRGVSGAR*VYTCSDLIGWFACCY*PSDF*DHCYRVVSC 325307

Query: 415    GKRQXXXXXXXXXXXASHDAYPVPYFTAAAALGTTREDVDRFCAQLRK 462
                R+           A +D +PV Y T A ALG  R++VD    +LRK
Sbjct: 325306 LDRKTIAGHDFDSFGAHYDEFPVAYVTFACALGMRRDEVDLLITKLRK 325163


>PHYCAscaffold_84
          Length = 182275

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 87    RRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGP 137
             RRH +   GI + G+   +     GS+LL+  TNL   D   I G+ D  P
Sbjct: 42637 RRHCHAISGILKPGESRMDSRAGKGSTLLHPDTNLRATDWGEICGVSDCSP 42485


>PHYCAscaffold_364
          Length = 4755

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = -2

Query: 90   WNLAHGI---GRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGPALVLPLATG 146
            W ++ G+   G S   ++    ++ SS  +  ++   + + R AG+E +  + VLPL  G
Sbjct: 2498 WLISSGVA*VGTSSSSSSSSSSSSSSSSSSSSSSSWYSSS*R-AGIETLSGSCVLPLELG 2322

Query: 147  MTLTLVL 153
            M++TL+L
Sbjct: 2321 MSVTLLL 2301


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,146,225
Number of Sequences: 917
Number of extensions: 527166
Number of successful extensions: 2462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2175
Number of HSP's gapped (non-prelim): 961
length of query: 498
length of database: 21,341,249
effective HSP length: 109
effective length of query: 389
effective length of database: 21,241,296
effective search space: 8262864144
effective search space used: 8262864144
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)