TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6577  |  | 1 to 12105                                        253   2e-67
Lt_contig1469  |  | 1 to 11090                                         33   0.35 
Lt_contig5581  |  | 1 to 4134                                          30   5.1  
Lt_contig6807  |  | 1 to 15121                                         30   5.1  

>Lt_contig6577  |  | 1 to 12105
          Length = 12105

 Score =  253 bits (647), Expect = 2e-67
 Identities = 193/580 (33%), Positives = 261/580 (45%), Gaps = 127/580 (21%)
 Frame = -3

Query: 9    LAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFL 68
            LAE  V   YI+ G ++    ++++  +L++RR P +   D +IE  L + ++MD+NNF 
Sbjct: 6670 LAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEALTDAAIELILRQLSLMDTNNFA 6491

Query: 69   DNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128
             +VG GERE RV S LV  RH++L HGIGRSGD+ +EQPKAAGSSLL K+TN+L+ D +R
Sbjct: 6490 HHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLLR 6311

Query: 129  IAGLEDMGPALVLPLATGMTLTLVLLAVKSKR---------------------------- 160
             AG      A+V+P++TGMTL LVL  V   R                            
Sbjct: 6310 QAGAPSTAAAVVVPMSTGMTLALVLRCVAKSRTEELMKEAEAVQPQLTVTKDSTSAASAA 6131

Query: 161  ----------------------PKTATKVVWCRLDQKTCVKAVLSAGLELVVVSPKLV-- 196
                                  P T   V+W R+DQKT +K + +AGL  V V  +    
Sbjct: 6130 QVQEPSTSEADRAGHDRTSLLVPATPRYVIWPRIDQKTALKCIDAAGLIPVPVQLRPAVT 5951

Query: 197  ------------GDQL----------------------CTDLDXXXXXXXXXXXXXXCCV 222
                         D L                      C   D               CV
Sbjct: 5950 LARSADPWVSANRDSLGRDKGSTGSPVTPTSSSSLFLECRVDDVAAAVNAVGGPSQVVCV 5771

Query: 223  VTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAWRRGRVDAVVQ 282
            +++TSCFAPR  D    +A+ C E  + +VVNNAYGVQ+  +   +  A R GRVD VVQ
Sbjct: 5770 LSTTSCFAPRLPDNTVGIAQYCKEAGIPYVVNNAYGVQSRRIMTRLDAAQRLGRVDFVVQ 5591

Query: 283  STDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQRCL 342
            S DKNF+VPVGG+++ S   +     AV   Y GRAS+SP++DL IT LS+G  G Q   
Sbjct: 5590 SGDKNFLVPVGGSIISS--SDKARCQAVAALYAGRASMSPIVDLFITALSLGRRGMQALW 5417

Query: 343  EDRGDVYGYMRTKLGECVGEFGERLL--DT-------------PG-----NPISIGVSLE 382
             DR      +  +L E   E  E LL  DT             PG     N IS+ V++ 
Sbjct: 5416 SDRYRCRARLIRQLREFARERREVLLVDDTDDKADTVSGSKTIPGTVTARNDISVAVTMR 5237

Query: 383  TH----AKLSEDGKD--------------VSFFGSMLFSRCVSGTRVVAPG-KRQXXXXX 423
            T+    AK+   G                   FG+ LF   V+G RV+ P          
Sbjct: 5236 TYGLPTAKVGSSGVQRESAQVEKVANWAAARAFGAQLFRSAVTGPRVITPAPSTPTTIAG 5057

Query: 424  XXXXXXASHD--AYPVPYFTAAAALGTTREDVDRFCAQLR 461
                    H   A P P    A  +G +  +VD   A+LR
Sbjct: 5056 CTFRNYGMHQDWAPPCPLLVIACGIGMSEAEVDALMARLR 4937


>Lt_contig1469  |  | 1 to 11090
          Length = 11090

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = +1

Query: 139  LVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVS------ 192
            +V+PL  G+ + LV+  + S  P  A  ++W +L    CV   + A + L+ ++      
Sbjct: 2662 IVIPLVMGVPMVLVVAEMASAVPSNAAFLMWIKLSFHRCVYLSM-AIMSLIYIAVDNALY 2838

Query: 193  PKLVGDQLCTDL 204
            P +  + LCT +
Sbjct: 2839 PTMFSEYLCTSI 2874


>Lt_contig5581  |  | 1 to 4134
          Length = 4134

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = +1

Query: 243  MCAELDVGHVVNNAYGVQATALCKEVTKAWRRG-----RVDAVVQSTDKNFM 289
            MCA L  G     A  VQA   C+ V K   RG     RVDA     +KN M
Sbjct: 3718 MCAYLGEGVHGYGAQAVQAARQCERVDKGGGRGRRAQARVDAAHMKAEKNKM 3873


>Lt_contig6807  |  | 1 to 15121
          Length = 15121

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 273  RRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLS 332
            +R    AV     + FM+P+ G +  +         A+  + P   S+     L ++LLS
Sbjct: 5311 QRFSASAVCWDWPRLFMLPLSGTITGT---------ALLLTMPAAHSLCVSRLLHLSLLS 5159

Query: 333  MGSHGWQRCLEDRGDVYG 350
             G H W+R    RG  YG
Sbjct: 5158 RGHHVWRRSSP*RGSHYG 5105


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,249,968
Number of Sequences: 7267
Number of extensions: 342455
Number of successful extensions: 1793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 986
length of query: 498
length of database: 10,532,946
effective HSP length: 104
effective length of query: 394
effective length of database: 9,777,178
effective search space: 3852208132
effective search space used: 3852208132
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)