TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium transferase [Micromonas sp. RCC299] (498 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_09 241 9e-64 contig_30 30 4.3 contig_17 30 5.6 contig_01 30 5.6 contig_11 29 7.3 contig_10 29 7.3 >contig_09 Length = 588727 Score = 241 bits (615), Expect = 9e-64 Identities = 187/583 (32%), Positives = 254/583 (43%), Gaps = 130/583 (22%) Frame = -2 Query: 9 LAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFL 68 LAE VS YI G ++ ++++ S+L++R P +G D +IE L + ++MD+NN Sbjct: 381978 LAEDFVSARYIEAGRESLRATARIMRSILAQRCCPDEGLTDAAIELILRQLSLMDTNNLA 381799 Query: 69 DNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128 +VG GERE RV S LV RH++L HGIGRSGD+ +EQPKAAGSSLL K+TN+L+ D +R Sbjct: 381798 HHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLIR 381619 Query: 129 IAGLEDMGPALVLPLATGMTLTLVLLAVKSKR---------------------------- 160 AG A+V+P+ATGMTL LVL V Sbjct: 381618 QAGAPSTAAAVVVPMATGMTLALVLRCVAKTHMKELMKEAEAVQLQRTVTKDSTSATSAA 381439 Query: 161 ----------------------PKTATKVVWCRLDQKTCVKAVLSAGLELVVVS-----P 193 P T V+W R+DQKT +K + +AGL V V P Sbjct: 381438 PVQEPPMSEADRDRHDRTSLPVPATPRYVIWPRIDQKTALKCIDAAGLVPVPVQLRPAVP 381259 Query: 194 KLVGDQLCTDLDXXXXXXXXXXXXXXCCVVTSTS-------------------------- 227 C + +S+S Sbjct: 381258 LARSAAPCVSTNRDSLDRGQDSIGSPSTPTSSSSLFLECHVDDVAAAVNAVGGPSQVVCV 381079 Query: 228 -----CFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAWRRGRVDAVVQ 282 CFAPR D +A+ C + + +VVNNAYGVQ+ + + A R GRVD VVQ Sbjct: 381078 LSTTSCFAPRLPDNTVAIAQYCKKAGIPYVVNNAYGVQSRRIMTRLDAAQRLGRVDFVVQ 380899 Query: 283 STDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQRCL 342 S DKNF+VPVGG+++CS G+ E AV Y GRAS+SP++DL IT LS+G G Q Sbjct: 380898 SGDKNFLVPVGGSIICS--GDKERCKAVAALYAGRASMSPIVDLFITALSLGRRGMQTLW 380725 Query: 343 EDRGDVYGYMRTKLGECVGEFGERLL-----------DT------------PGNPISIGV 379 DR + +L E E LL DT P N IS+ V Sbjct: 380724 SDRYKCRARLIRQLRVFARERREVLLVDDSDDDKADEDTVGGSQRTSNAVVPRNDISVAV 380545 Query: 380 SLETH----AKLSEDGKDVS--------------FFGSMLFSRCVSGTRVVAPG-KRQXX 420 ++ + A+ S G + G+ LF V+G RV+ P Sbjct: 380544 TMRAYGLPAAEASSSGAQLGSEQAGRVTNWAAARALGAQLFRSAVTGPRVITPAPSTPTT 380365 Query: 421 XXXXXXXXXASHD--AYPVPYFTAAAALGTTREDVDRFCAQLR 461 H P P A +G + +VD A+LR Sbjct: 380364 IAGCTFRNYGMHQDREPPCPLLVIACGIGMSESEVDALMARLR 380236 >contig_30 Length = 1374157 Score = 30.0 bits (66), Expect = 4.3 Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 4/136 (2%) Frame = +1 Query: 225 STSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATAL----CKEVTKAWRRGRVDAV 280 STSC AP + +A +C+ V G+Q+ + T +GR A Sbjct: 879598 STSCVAPGSREA------VCSPSPPRVVAPRPSGLQSPVMRAAPAASTTLFPPKGRPSAD 879759 Query: 281 VQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQR 340 D M P GG V G + + + G +S S L + + S R Sbjct: 879760 EGKGDIVLMAPAGGLVSREAPGPLRMPHGLSDAMSGNSSTSFCLSAAVMSSRLASACCVR 879939 Query: 341 CLEDRGDVYGYMRTKL 356 L G V G T+L Sbjct: 879940 ALAAAGGVMGDTTTRL 879987 >contig_17 Length = 671483 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/78 (32%), Positives = 34/78 (43%) Frame = -3 Query: 273 RRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLS 332 +R R A+ + FM+P GA+ T V V S +S +L L LLS Sbjct: 342474 QRLRASAICSHRSRLFMLPRSGAI-------TSAVLLVAVSAAHSLGVSRILHL--PLLS 342322 Query: 333 MGSHGWQRCLEDRGDVYG 350 G H +R RG +YG Sbjct: 342321 RGHHVRRRSSPHRGALYG 342268 >contig_01 Length = 283432 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -2 Query: 337 GWQRCLEDRGDVYGYMRTKLGECVGEFGERLLDTPGNPISIGVSLETHAKLSEDGK 392 GW+R +E GDV G + + GE G + TP P + ++ E + E G+ Sbjct: 241785 GWRRGMEGEGDVVGGVES-AGEGAAGSGVTTMSTPQLPAAAAMADERMRRQRESGR 241621 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 313 SYPGRASISPVLDLLITLLSMGSHGWQR 340 S+PGR S+ L ++L+S +H WQR Sbjct: 17922 SFPGRPSLRTAPLLFMSLVSSTAHSWQR 17839 >contig_11 Length = 580223 Score = 29.3 bits (64), Expect = 7.3 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -1 Query: 139 LVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVS------ 192 +V+P+ G + LV+ + + P A ++W +L CV + A + L+ ++ Sbjct: 189953 IVIPVIMGAPMVLVVAELAAAVPSNAGFLMWIKLSFHRCVYLSM-AIMSLIYIAVDNALY 189777 Query: 193 PKLVGDQLCTDL 204 P + + LCT + Sbjct: 189776 PTMFSEYLCTSI 189741 >contig_10 Length = 558170 Score = 29.3 bits (64), Expect = 7.3 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 10/92 (10%) Frame = +1 Query: 176 TCVKAVLSAGLELVVVSPKLVGDQLCTDLDXXXXXXXXXXXXXXCCVV---TSTSCFAPR 232 T V AV++A + LV S DQ+C+D CVV T+T P Sbjct: 86206 TAVAAVVAATVLLVATSATAQADQMCSDPANPLASIDYSDAAVQACVVARCTTTLNVTPT 86385 Query: 233 A-------GDACSDVAKMCAELDVGHVVNNAY 257 G A S+ + C +L++G+ NAY Sbjct: 86386 ITADGFCDGVATSESSAPCNKLEMGY---NAY 86472 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.319 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,288,684 Number of Sequences: 36 Number of extensions: 370798 Number of successful extensions: 2059 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 2015 Number of HSP's gapped (non-prelim): 161 length of query: 498 length of database: 10,814,999 effective HSP length: 105 effective length of query: 393 effective length of database: 10,811,219 effective search space: 4248809067 effective search space used: 4248809067 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)