TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplace...   289   6e-78

>gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251127, whole genome shotgun
             sequence
          Length = 102005

 Score =  289 bits (739), Expect = 6e-78
 Identities = 164/457 (35%), Positives = 267/457 (58%), Gaps = 5/457 (1%)
 Frame = -3

Query: 9     LAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFL 68
             L+  ++S  YI     +    S  +  LLS R+L      D  IE  +S+ ++MD+NNF 
Sbjct: 24363 LSSHIISPQYIK*SQNSFQTFSNTIKILLS*RQLFPHPLPDLEIELLISQLSLMDTNNFS 24184

Query: 69    DNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128
               +GVGERE R+ S +V +RH+ ++HGIGRSG+++AEQPKA GSSL+ K+T  LV D ++
Sbjct: 24183 QKIGVGEREGRIIS*IVQKRHFYMSHGIGRSGNLSAEQPKAPGSSLILKITEFLVKDMLK 24004

Query: 129   IAGL-EDMGPALVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLE 187
             + GL +     L+LP ATGM   L L+A+K         V+W R+DQKTC+K +L+A LE
Sbjct: 24003 LVGLCKKSRNLLILPAATGMACFLTLMALKKNIS*EKKYVIWSRIDQKTCLKCILAANLE 23824

Query: 188   LVVVSPKLVGDQLCTDLDXXXXXXXXXXXXX-XCCVVTSTSCFAPRAGDACSDVAKMCAE 246
               V+    +GD+LC+D++                CV ++TSCFAPR  D  +++ ++C  
Sbjct: 23823 PYVLELV*IGDKLCSDVEKLGKLLENNDFKK*VLCVFSTTSCFAPRIPDNITEIGRICFV 23644

Query: 247   LDVGHVVNNAYGVQATALCKEVTKAWRRG-RVDAVVQSTDKNFMVPVGGAVVCSGKGNTE 305
              ++ H+VNNAYG+    +   + + + +  R+DA++ STDKNF+VPVGGA++     N  
Sbjct: 23643 NNIPHIVNNAYGL*CAKIVNLINETYSKNHRIDAIISSTDKNFLVPVGGAIIYG--ENK* 23470

Query: 306   IVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYMRTKLGECVGEFGE 365
             ++  + ++YPGRAS+SP++DL IT LS G   W+  L  R +   Y++ KL   + ++ E
Sbjct: 23469 LIKEINENYPGRASLSPIIDLFITFLSTGREKWE*LLNIRKENLIYLKEKLN*VLLKYEE 23290

Query: 366   RLLDTPGNPISIGVSLETHAKLSEDGKDVSFFGSMLFSRCVSGTRVVAPGKRQXXXXXX- 424
             R+L +  N IS+G +L+   K  ++   +   G +L+++ + G R++   ++        
Sbjct: 23289 RVL*STENSISVGFTLKNI*KN*KN*ISILELGGILYNKRIMGGRIIINNEKVLKIDNL* 23110

Query: 425   XXXXXASHDAY-PVPYFTAAAALGTTREDVDRFCAQL 460
                   S+D Y  +PY T A A+G  ++++D F  +L
Sbjct: 23109 FKNYGCSNDFYTELPYMTVACAIGMEKKEIDMFLIKL 22999


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,296,568
Number of Sequences: 2017
Number of extensions: 88244
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 9
length of query: 498
length of database: 16,266,656
effective HSP length: 107
effective length of query: 391
effective length of database: 16,050,837
effective search space: 6275877267
effective search space used: 6275877267
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)