TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338244961|gb|AFNH01000684.1| Gregarina niphandrodes asmbl.159...    29   4.3  

>gi|338244961|gb|AFNH01000684.1| Gregarina niphandrodes asmbl.15993,
             whole genome shotgun sequence
          Length = 34239

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 23/105 (21%), Positives = 41/105 (39%)
 Frame = -1

Query: 256   AYGVQATALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYP 315
             A+G  + +        W    +  + +  D    VPV   VVC   G + +V     +  
Sbjct: 14436 AFGTPSVSATAGPLLGWGESSLGQLPRWLDGGVAVPVTVGVVC---GRSGVVPGTAGAEA 14266

Query: 316   GRASISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYMRTKLGECV 360
             GRA           + ++G++GW   +  R    G+   +LG+ V
Sbjct: 14265 GRARAQDAAVREAGVAALGTNGW*LSVFPRPGGLGHRTRRLGKPV 14131


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,011,681
Number of Sequences: 3680
Number of extensions: 142249
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 456
length of query: 498
length of database: 5,120,956
effective HSP length: 99
effective length of query: 399
effective length of database: 4,756,636
effective search space: 1897897764
effective search space used: 1897897764
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)