TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...   370   e-102

>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score =  370 bits (949), Expect = e-102
 Identities = 198/449 (44%), Positives = 282/449 (62%), Gaps = 21/449 (4%)
 Frame = +3

Query: 35      SLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVARRHWNLAH 94
               SL S RRLP  GWDD  I  FL++ A MDSNN+++N GVGERE R++S +V  RH+ LAH
Sbjct: 3466914 SLFS*RRLPDKGWDDQFIRWFLNDIAKMDSNNYVENAGVGEREGRIHSRIVQERHFGLAH 3467093

Query: 95      GIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGPALVLPLATGMTLTLVLL 154
               GIGRSGD++ +QPKAAGSSL+ +L + LV D+M +AGL  +G  LVLP+ATGMT+ L L+
Sbjct: 3467094 GIGRSGDISEQQPKAAGSSLVQRLCSYLVMDSMSVAGLNSIGECLVLPMATGMTIALTLM 3467273

Query: 155     A-VKSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVSPKLVGDQLCTDLDXXXXXXXX 213
                  K  RP TA  V+W R+DQK+C+KA+ +AGL  VV+   L GD + TDL+        
Sbjct: 3467274 TFTKHCRPPTAKYVIWPRIDQKSCLKAIATAGLVPVVIENVLQGDVITTDLEAIENKIIE 3467453

Query: 214     XXXXXXCCVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAW- 272
                      CV ++TSCFAPR  D   +++++C + +VGH++NNAYG+Q + +   + ++  
Sbjct: 3467454 LGPENVVCVYSTTSCFAPRVPDRIIEISELCYKYNVGHIINNAYGLQCSKIVHAINESCQ 3467633

Query: 273     --RRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTE---------------IVDAVRKSYP 315
                 ++ RVDA++QSTDKN+MVPVGGA++ S K   +               ++D + K+YP
Sbjct: 3467634 SDKQRRVDAIIQSTDKNYMVPVGGAIITSPKKEKQQHKQKEKGEEEQQVNLIDLISKNYP 3467813

Query: 316     GRASISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYMRTKLGECVGEFGE-RLLDTPGNP 374
               GRA+ SP+LDL ITLLSMG  G++  L++R  +  Y R +L     +F   RLLDTP N 
Sbjct: 3467814 GRANGSPILDLFITLLSMGRQGYKELLDERKQLLTYFRDQLASLSLQFPNCRLLDTPDNR 3467993

Query: 375     ISIGVSLETHAKLSEDGKDVSFFGSMLFSRCVSGTRVV-APGKRQXXXXXXXXXXXASHD 433
               IS+G++L   A   +    +S  GS LFSR  SG RV+  PG ++           +  +
Sbjct: 3467994 ISLGLALAV-ASGDQQKLSISMIGSKLFSRSCSGARVIELPGSKKSVAGLDFESYGSHIN 3468170

Query: 434     AYPVPYFTAAAALGTTREDVDRFCAQLRK 462
                Y   Y T A A+G T++D+D F  +L+K
Sbjct: 3468171 NYHSSYLTVACAIGITKDDIDTFMKRLKK 3468257


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,509,286
Number of Sequences: 25
Number of extensions: 168973
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 14
length of query: 498
length of database: 10,339,736
effective HSP length: 104
effective length of query: 394
effective length of database: 10,337,136
effective search space: 4072831584
effective search space used: 4072831584
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)