TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...   357   1e-98

>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score =  357 bits (916), Expect = 1e-98
 Identities = 200/505 (39%), Positives = 298/505 (59%), Gaps = 53/505 (10%)
 Frame = +3

Query: 11      EGLVSKAYINQGSQATARRSKLVTSLL--------------------------------- 37
               +GL+  +YI+Q  Q T++ +KL+ +LL                                 
Sbjct: 3095700 KGLIKGSYIDQAIQGTSQFNKLLETLLIHVGFLNSFFKKI*NKKKKKKVNLIFFYIHTY* 3095879

Query: 38      -----SERRLPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVARRHWNL 92
                     +++LP  G++D  IE  L+E ++MDSNNF++N+GVGERE R+YS LV +RH+  
Sbjct: 3095880 HPKKKKKKKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLVEKRHYGF 3096059

Query: 93      AHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLE--DMGPALVLPLATGMTLT 150
               AHGIGRSGD+  +QPKAAGSSL+ KLT+ LV DAM++AGLE   +   L+LP+ATGMTL 
Sbjct: 3096060 AHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCLLLPMATGMTLA 3096239

Query: 151     LVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVSPKLVGDQLCTDLDXXXXX 210
               L +L +KS        V+W R+DQK+C+K++++AGL  +V+  +L GD + TDL      
Sbjct: 3096240 LTMLTLKSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIRTDLVAIEDK 3096419

Query: 211     XXXXXXXXXCCVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTK 270
                         CV ++TSCFAPR  D   +++++C   ++GH++NNAYG+Q + +   +++
Sbjct: 3096420 IKELGVDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKILHNISQ 3096599

Query: 271     AWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITL 330
               A + GRVDA +QSTDKNFMVPVGGA++ SG  N+E +D + ++YPGRA+ SP+LD+ ITL
Sbjct: 3096600 ACKLGRVDAFIQSTDKNFMVPVGGAII-SGP-NSEFIDQISRNYPGRANSSPILDVFITL 3096773

Query: 331     LSMGSHGWQRCLEDRGDVYGYMRTKLGECVGEFGERLLDTPG-NPISIGVSLETH----- 384
               LSMG  GW   L++R ++  Y   +L +   E  E+LL+T   N IS  ++L ++     
Sbjct: 3096774 LSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFALTLSSNNFNNN 3096953

Query: 385     -----AKLSEDGKDVSFFGSMLFSRCVSGTRVV-APGKRQXXXXXXXXXXXASH-DAYPV 437
                       + +    S  GS LFSR  SG+RV+     ++            SH D Y  
Sbjct: 3096954 EEIISNNNNNNNNTFSMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHIDNYST 3097133

Query: 438     PYFTAAAALGTTREDVDRFCAQLRK 462
                Y T A A+G T+ ++D F  +L K
Sbjct: 3097134 SYLTVACAIGITKLEIDTFIQRLSK 3097208


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,940,007
Number of Sequences: 6
Number of extensions: 107512
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 14
length of query: 498
length of database: 11,314,357
effective HSP length: 105
effective length of query: 393
effective length of database: 11,313,727
effective search space: 4446294711
effective search space used: 4446294711
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)