TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1068  |  | 1 to 155071                                       270   2e-72
Cf_Contig1071  |  | 1 to 673414                                        30   6.4  
Cf_Contig1005  |  | 1 to 178835                                        30   6.4  
Cf_Contig1054  |  | 1 to 431369                                        29   8.3  

>Cf_Contig1068  |  | 1 to 155071
          Length = 155071

 Score =  270 bits (691), Expect = 2e-72
 Identities = 184/490 (37%), Positives = 243/490 (49%), Gaps = 81/490 (16%)
 Frame = -3

Query: 9     LAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFL 68
             LAE LVS  Y+  G ++    ++ + SL+++RR P  G  D  I+  L + A MD+NNF 
Sbjct: 18851 LAEDLVSAHYLAAGRESLQATARTLRSLIAQRRCPDVGLSDAVIQLLLRQLAAMDTNNFA 18672

Query: 69    DNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128
              +VG GERE RV S LV +RH++  HGIGRSGD+A+EQPKAAGSSLL KLTN++V D +R
Sbjct: 18671 AHVGGGEREGRVASALVRQRHFDFTHGIGRSGDLASEQPKAAGSSLLYKLTNIMVLDLIR 18492

Query: 129   IAGLEDMGPALVLPLATGMTLTLVLLAVKSKRPK---------------------TATKV 167
             +AG      A+V+P+ATGMTL LVL  V   R K                     T   V
Sbjct: 18491 LAGAPSTAAAVVVPMATGMTLALVLRCVAKTRVKEVDAQQQTAATTTGTTASPRVTPRYV 18312

Query: 168   VWCRLDQKTCVKAVLSAGL-----ELVVVSPKLVGDQLCTDLDXXXXXXXXXXXXXXC-- 220
             VW R+DQKT +K + SAGL     EL    P        +  D              C  
Sbjct: 18311 VWPRIDQKTALKCIDSAGLLPLPVELRPAPPLTRSSAEASSTDEGGPAASSSSLFLHCDV 18132

Query: 221   -----------------CVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATA 263
                              CV+++TSCFAPR  D    +A+ C E  + +VVNNAYGVQ+  
Sbjct: 18131 EDIAATINAVGGPAHVVCVLSTTSCFAPRLPDNTVAIARYCKEHAIPYVVNNAYGVQSRR 17952

Query: 264   LCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPV 323
             +   +  A R GRVD VVQS+DKNF+VPVGGAVV S   + E  +A    Y GRAS SP+
Sbjct: 17951 IMTRIDAAQRLGRVDYVVQSSDKNFLVPVGGAVVTS--SSAERCNAAAALYAGRASASPI 17778

Query: 324   LDLLITLLSMGSHGWQRCLEDR--------GDVYGYMRTKLGECVGEFGERLL------- 368
             +DL IT LS+G  G Q    +R          + G+ + +    + + GE  L       
Sbjct: 17777 IDLFITALSLGRRGMQELWAERYRCRRRLVDQLCGFAKARGEVVLVDDGEGALSGEEDAP 17598

Query: 369   -----------------DTPGNPISIGVSLETHAKLSEDG----KDVSFFGSMLFSRCVS 407
                                P N IS+ V++      + D           G+ LF R V+
Sbjct: 17597 AAAGTQAKDKKQQQQQQQQPRNDISVAVTMRHFGAAASDDDTTWSAARALGAQLFRRAVT 17418

Query: 408   GTRVVAPGKR 417
             G RVV P  R
Sbjct: 17417 GPRVVVPAPR 17388


>Cf_Contig1071  |  | 1 to 673414
          Length = 673414

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 292    VGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQRCLEDRGDV 348
              V GAVV   KG+  +VD V  +  GRA ++   + L+ +L +   G +  L D  DV
Sbjct: 375797 VVGAVVLLYKGHVALVDLVEWNRGGRARVA--AEHLLVVLRVAGVGVEPALVDEADV 375961


>Cf_Contig1005  |  | 1 to 178835
          Length = 178835

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 85    VARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGPALV 140
             VA   W L HG GR+G       +   + L N   ++LV    RIA +  + P++V
Sbjct: 58918 VASPFWRL-HGAGRAGCDRQHSTRNTAAKLHNIQPHVLVGTPQRIADIMRLSPSIV 59082


>Cf_Contig1054  |  | 1 to 431369
          Length = 431369

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 430    ASHDAYPVPYFTAAAALGTTREDVDRFCAQLRKC 463
              AS    P+P  +AAAA GT R+   R C++ R+C
Sbjct: 113370 ASLRVSPLPAESAAAAYGTDRQHD*RVCSRRREC 113471


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,423,511
Number of Sequences: 1089
Number of extensions: 392612
Number of successful extensions: 1950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 687
length of query: 498
length of database: 12,349,441
effective HSP length: 105
effective length of query: 393
effective length of database: 12,235,096
effective search space: 4808392728
effective search space used: 4808392728
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)