TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848391|gb|ADNL01002212.1| Astrammina rara contig02645, who...    30   0.098

>gi|330848391|gb|ADNL01002212.1| Astrammina rara contig02645, whole
            genome shotgun sequence
          Length = 1942

 Score = 30.0 bits (66), Expect = 0.098
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
 Frame = +3

Query: 312  KSYP---GRASISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYM-----RTKLGECVGEF 363
            K YP   GR  ++ VL  L TL    +  W RC   RG V+G +     R +  E VG  
Sbjct: 1077 K*YP*LAGRMCMAVVLGSLSTLAPK-ARIWTRCAVSRGHVFGTLVKQAGRVRTCEKVGTA 1253

Query: 364  GERLLDTP--------------GNPISIGVSLETHAKLSEDGKDVSFFGSMLFSRCVS 407
              +L D                   I +  SL +H +  ++ K  SF  S+L +RCVS
Sbjct: 1254 HMQLSDVLILYSFLFICRFFAFSESIPMMYSLSSHQQNKKNDKF*SF--SVLMARCVS 1421


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,797
Number of Sequences: 3231
Number of extensions: 8416
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of query: 498
length of database: 483,365
effective HSP length: 78
effective length of query: 420
effective length of database: 231,347
effective search space: 97165740
effective search space used: 97165740
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)