TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                      194   9e-78
TcIL3000_10_v2.embl                                                    29   5.1  
T.congo.pschr.3.                                                       29   5.1  

>T.congo.pschr.11
          Length = 4797796

 Score =  194 bits (494), Expect(2) = 9e-78
 Identities = 105/279 (37%), Positives = 159/279 (56%), Gaps = 50/279 (17%)
 Frame = -3

Query: 1       MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
               M+  +    E +V P Y++ G E++RS E  +R +L + +CP+ G ++  +EL LH++A+
Sbjct: 3680408 MDERALHLAESIVEPRYIQAGVESQRSVERTVRSILAQRRCPDEGLNDCAIELLLHQIAM 3680229

Query: 61      MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
               MD+NNF  + G GEREGRVAS LV RR+Y   HG+GRSGDI + QPKAAGSSLL K+TN 
Sbjct: 3680228 MDTNNFTAHVGAGEREGRVASTLVQRRYYNLTHGVGRSGDICSDQPKAAGSSLLYKLTNH 3680049

Query: 121     LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPK------------------- 161
               +VLD+++ AG  ++A+  V+PMATGM+++L   ++ H R +                   
Sbjct: 3680048 MVLDLLRQAGTPSLASAAVIPMATGMTISLVLRSIAHHRDQETRTRATEAAVDDQRRSDC 3679869

Query: 162     ---------AKYIIWPRIDQKSCFKSMITAGFEPVVIE---------------------N 191
                         +++IW R+DQK+  K +  +GF PVV+                      +
Sbjct: 3679868 GATSVAPVAPRFVIWTRVDQKTALKCIELSGFIPVVVPLRRASVLRRYRDEDKDGPGAVS 3679689

Query: 192     VLEGDELRTDLKAVEAKVQEL-GPDCILCIHSTTSCFAP 229
                L    L+  +  V A ++ + GP  +LC+ STTSCFAP
Sbjct: 3679688 SLHSYFLQAHVDDVAASIERVGGPTNVLCVLSTTSCFAP 3679572



 Score =  114 bits (286), Expect(2) = 9e-78
 Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
 Frame = -1

Query: 257     VQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASA 316
               VQS   M  I    R+GR+DA VQS DKNF+VPVGGA+++G   + +   + +Y GRASA
Sbjct: 3679570 VQSRSIMQRIDAAIRLGRVDAIVQSGDKNFLVPVGGAVLSG-GRTEVARATSLYAGRASA 3679394

Query: 317     SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL---------HTP 367
               SP +D+ IT LSLG +G+++L   R  +   L  +++  + A  E LL         H  
Sbjct: 3679393 SPVVDLFITALSLGRSGFQRLWDARYFLRELLEQRLRDFARAREETLLDEFDPQGDMHGV 3679214

Query: 368     H-----------------------------NPISLAMTLKTLDEHRDKAVTQLGSMLFTR 398
               H                             N IS A+T++ +    + A   +G+ LF  
Sbjct: 3679213 HDDGSCNRHNSSGLSAATDTRRGDAKYALRNDISFAITMRNIGGPSEAAA--VGARLFRG 3679040

Query: 399     QVSGARVV-PLGSMQTVSGYTFRGFMSHTNNYP-CAYLNAASAIGMKMQDVDLFIKRLDR 456
                V+G RVV P     ++ G+ FR +  HT++ P C  L  A  +GMK++D +  +KRL+ 
Sbjct: 3679039 AVTGPRVVLPNEEKISLCGHLFRNYGMHTDDTPACPLLVLACGVGMKIEDAEGLMKRLEE 3678860

Query: 457     CLKAVR 462
                  A R
Sbjct: 3678859 VWPARR 3678842


>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 12      LVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLG 68
               L  P+ + Q C A   H  L+ +         N W +  L + L ELA  DS   +G
Sbjct: 1857169 LRGPSPLVQECAAATLHYVLLLMYTSMDTSAVNTWQDKFLAISLDELATRDSKRHIG 1857339


>T.congo.pschr.3.
          Length = 1451265

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 19/197 (9%)
 Frame = +3

Query: 186     PVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY 245
               PVV+  + E  +L ++  A EA+V  +   C+L +     CF PR   ++ E      N 
Sbjct: 1422852 PVVVSGMCEA-QLASETSASEAEVDAMVTRCVLRVCEVYPCF-PRGRRKMAEDYDRNVNI 1423025

Query: 246     D----IPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN-- 299
               D    + +      G+ S +    ++    V  +      LD++F      A +A  N  
Sbjct: 1423026 DKFEYVTYTREEGGGINSDRAPTPLKYCMHVNTL-----QLDQSFPFTTTVAEVATTNTV 1423190

Query: 300     ---------DSFIQEISKMYPGRASASPSLDVLITLLSLGS----NGYKKLLKERKEMFS 346
                        ++  + IS +   R S    + V++ +LSLG       Y K +   K    
Sbjct: 1423191 RLDAEKTVGETLSRGISAL-SRRTSDENLVSVMLEVLSLGGFARPGAYLKEVIAAKSADE 1423367

Query: 347     YLSNQIKKLSEAYNERL 363
                + N +K+ S    E+L
Sbjct: 1423368 EIMNTVKEFSNLLREKL 1423418


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,704,968
Number of Sequences: 11
Number of extensions: 192541
Number of successful extensions: 956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 298
length of query: 501
length of database: 7,429,315
effective HSP length: 102
effective length of query: 399
effective length of database: 7,428,193
effective search space: 2963849007
effective search space used: 2963849007
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)