TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.837 of Sphaeroforma arctica JP610                          137   9e-32
supercont1.25 of Sphaeroforma arctica JP610                            35   0.36 

>supercont1.837 of Sphaeroforma arctica JP610
          Length = 39100

 Score =  137 bits (344), Expect = 9e-32
 Identities = 71/147 (48%), Positives = 100/147 (68%), Gaps = 8/147 (5%)
 Frame = -3

Query: 254   AYGVQSSKCMH-------LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSF-IQE 305
             AY   S KC+        +  Q  R+GR+DA+VQS DKNF+VPVGG++IAG +    + +
Sbjct: 21371 AYPKLSCKCLSDL*IYSLIFSQAMRLGRVDAYVQSTDKNFLVPVGGSVIAGPDKHLKVAD 21192

Query: 306   ISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH 365
             + K YPGRAS +P+LDV ITLLS+GSNGYK  L +RKE++  L  ++ +++  + ERLLH
Sbjct: 21191 VCKTYPGRASGTPTLDVFITLLSMGSNGYKHRLLQRKEIYEILKQKMSEVAAKHGERLLH 21012

Query: 366   TPHNPISLAMTLKTLDEHRDKAVTQLG 392
             TPHNPISLA+T+      R  + T++G
Sbjct: 21011 TPHNPISLAITI--TPRRRASSQTEVG 20937



 Score =  133 bits (335), Expect = 1e-30
 Identities = 59/108 (54%), Positives = 83/108 (76%)
 Frame = -1

Query: 93    HGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCF 152
             HGIGRSGDISA QPKAAGSSL++K+T   +L+I+KL+G     +C+V P+ATGM++ +C 
Sbjct: 22576 HGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGATRTKSCYVFPLATGMAVVMCL 22397

Query: 153   LTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRT 200
             L L+ K P A +++WPRIDQK+C K+++  GF PVVIEN+ E ++  T
Sbjct: 22396 LALKAKNPTATHVVWPRIDQKTCLKAIVATGFIPVVIENITEDNDKGT 22253



 Score = 84.7 bits (208), Expect = 5e-16
 Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = -3

Query: 196   DELRTDLKAVEAKVQELG-PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNA 254
             DELRTDL A+E  ++  G P+ +LC+ STTSCFAPR  D++ E+AV+C    I H+VNNA
Sbjct: 21743 DELRTDLPAIEDAIKRAGGPEKVLCVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNA 21564

Query: 255   YGVQSSKCMHLIQQ 268
             YGV SS  MH + +
Sbjct: 21563 YGVTSSLIMHHVNE 21522



 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 32/71 (45%), Positives = 50/71 (70%)
 Frame = -3

Query: 388   VTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDV 447
             VT+LG+MLF R VSGARVV    ++ V+G +F+G+ +H + Y   YL  A+A+GM  +DV
Sbjct: 20525 VTRLGAMLFRRGVSGARVVSADDVKVVAGVSFKGYGAHADAYFTPYLTVAAALGMTRKDV 20346

Query: 448   DLFIKRLDRCL 458
             +  ++R+D+ L
Sbjct: 20345 EQVVERIDKTL 20313



 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 27/58 (46%), Positives = 40/58 (68%)
 Frame = -1

Query: 40    KCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGR 97
             + P  GWD++T++LFL +L++MDSNNF    G GEREGR+ S+LV   H  ++  + R
Sbjct: 23359 RLPVGGWDDATIKLFLQDLSLMDSNNFNEYSGAGEREGRIESSLVRDMHNGYVSAV*R 23186



 Score = 32.7 bits (73), Expect = 2.3
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 1     MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK 38
             MN+ ++   E LV   YVRQ  E+R + E+L++ +L +
Sbjct: 25027 MNKPNYKLAEGLVPANYVRQAVESRNTRENLVKTVLSQ 24914


>supercont1.25 of Sphaeroforma arctica JP610
          Length = 228082

 Score = 35.4 bits (80), Expect = 0.36
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
 Frame = +3

Query: 51     LELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAG 110
              L L  H ++  D     G CG  ER+ R++    + +H      I    DI    P   G
Sbjct: 114048 LGLIAHVVSEGDVPGHTG-CGWSERDRRLSYNCQSAKH------IPMCRDIRTDMPFKPG 114206

Query: 111    SSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYII-WPR 169
              S  L+      +  ++ +A ++     F+VP A  +++ LC    R      K+I+ WP 
Sbjct: 114207 SRYLSNR*RQKM*VLLSVAAIYF*RYIFIVPSARPLTMLLCLKDARTCTRTTKHILTWPN 114386

Query: 170    IDQKS 174
              I  +S
Sbjct: 114387 ISAQS 114401


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,749,431
Number of Sequences: 15618
Number of extensions: 1078128
Number of successful extensions: 4842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 3415
Number of HSP's gapped (non-prelim): 2324
length of query: 501
length of database: 40,529,447
effective HSP length: 114
effective length of query: 387
effective length of database: 38,748,995
effective search space: 14995861065
effective search space used: 14995861065
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)