TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_58                                                      261   e-114
PHYCAscaffold_38                                                       31   3.8  
PHYCAscaffold_6                                                        30   8.4  

>PHYCAscaffold_58
          Length = 327658

 Score =  261 bits (667), Expect(2) = e-114
 Identities = 130/254 (51%), Positives = 176/254 (69%), Gaps = 7/254 (2%)
 Frame = -3

Query: 1      MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
              MN +S A  E+L+   YV+QG  A RS E L+  LL + + P+ GWD++++E+ L  L+ 
Sbjct: 326858 MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEGWDDASVEMLLQTLSA 326679

Query: 61     MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120
              MDSNNF G+ G GERE RV S +VARRH+R  HG+GRSGD++AVQPKAAGSSLL ++ NS
Sbjct: 326678 MDSNNFQGSAGAGEREARVFSPMVARRHFRLAHGVGRSGDVAAVQPKAAGSSLLVQLANS 326499

Query: 121    LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI 180
              L  D+++LAG+  V    V+P+ATGMSLTL  L L   +P A Y+IWPRIDQKSCFKS++
Sbjct: 326498 LAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLNELKPGAHYVIWPRIDQKSCFKSIL 326319

Query: 181    TAGFEPVVIENVLEGDE-------LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPD 233
               AG  P+V+ NVL  +E       L+TDL  +   + + G D IL + STTSCFAPR  D
Sbjct: 326318 AAGLTPLVLPNVLVEEEDGRLGGYLKTDLAGMAELIDQYGADSILAVMSTTSCFAPRAYD 326139

Query: 234    RLEELAVICANYDI 247
               ++E+A +C + +I
Sbjct: 326138 SVQEIAKMCQDRNI 326097



 Score =  170 bits (430), Expect(2) = e-114
 Identities = 106/320 (33%), Positives = 160/320 (50%), Gaps = 78/320 (24%)
 Frame = -1

Query: 249    HIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK 308
              H++NNAYGVQ+SKC+H ++   RVGR+DA VQSLDKNFMVPVGGAI+   +   +  ++K
Sbjct: 326020 HVINNAYGVQASKCVHEVELAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAK 325841

Query: 309    MYPGRASASPSLDVLITLLSL----------------------GSNGYKKLLKERKEMFS 346
               YPGRASA+P+LD  IT+L +                      G +GY++LL ERK +  
Sbjct: 325840 FYPGRASATPTLDFFITMLQMVSSPEIHVI*LLSSSSQLVCYQGKSGYRQLLDERKHLAV 325661

Query: 347    YLSNQIKKLSEAYNERLLHTPHN-----------------------PISLAMTLKTL--- 380
              Y+  +++ L+    ER+L    N                        IS A+TL TL   
Sbjct: 325660 YMREKLESLAAEEGERVLRVSSNEVLVGCVLEWLGISAFLTLKCCAQISFALTLGTLCSD 325481

Query: 381    ---DEHRDKAVTQLGSMLFTRQVSGA---------------------------RVVPLGS 410
                  + + + +T LGSMLF+R VSGA                           RVV    
Sbjct: 325480 VMDKKEKSQQLTFLGSMLFSRGVSGAR*VYTCSDLIGWFACCY*PSDF*DHCYRVVSCLD 325301

Query: 411    MQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESD 470
               +T++G+ F  F +H + +P AY+  A A+GM+  +VDL I +L + ++  R ++SK   
Sbjct: 325300 RKTIAGHDFDSFGAHYDEFPVAYVTFACALGMRRDEVDLLITKLRKTIQEWRTKQSKALS 325121

Query: 471    DNYDKTEDVDIEEMALKLDN 490
                  +   + +E+ +    N
Sbjct: 325120 VTIPREFQLHVEQKSTHESN 325061


>PHYCAscaffold_38
          Length = 550336

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
 Frame = -1

Query: 148    LTLCFLTLRHKRPKAKYIIWPRIDQ-----------KSCFKSMITAGFEPVVIENVLEGD 196
              LTLCFL L+H+        + R+++           ++    +I+     +V + V E D
Sbjct: 498745 LTLCFLFLQHEIEMGPSTYYARVERQDGEMRGAHTNRAWTGRLISDDLAVIVTDFVDEDD 498566

Query: 197    ELRTDLKAVEAKVQELGPDCILCIHSTT 224
              E  TD    EA+  ++G D +  + ST+
Sbjct: 498565 EEGTDAARREAQEVQIGSDDVPLVPSTS 498482


>PHYCAscaffold_6
          Length = 1423605

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = -1

Query: 140    VPMATGMSLTL-------CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFE 185
              VP+++GM L +        F+T R+KRPK   +  PR     CF  ++ +G E
Sbjct: 673104 VPISSGMQLRIHSSSALKAFITRRNKRPKRPLLSSPR--NSCCFPVILRSGQE 672952


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,252,998
Number of Sequences: 917
Number of extensions: 521295
Number of successful extensions: 2698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2262
Number of HSP's gapped (non-prelim): 1199
length of query: 501
length of database: 21,341,249
effective HSP length: 109
effective length of query: 392
effective length of database: 21,241,296
effective search space: 8326588032
effective search space used: 8326588032
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)