TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_09 285 7e-77 contig_36 33 0.39 contig_27 31 1.9 contig_34 31 2.5 contig_13 31 2.5 contig_35 30 5.7 contig_29 30 5.7 >contig_09 Length = 588727 Score = 285 bits (728), Expect = 7e-77 Identities = 201/587 (34%), Positives = 279/587 (47%), Gaps = 133/587 (22%) Frame = -2 Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60 M+ S E VS Y+ G E+ R+ ++R +L + CP+ G ++ +EL L +L++ Sbjct: 381999 MDDRSLKLAEDFVSARYIEAGRESLRATARIMRSILAQRCCPDEGLTDAAIELILRQLSL 381820 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NN + G GEREGRV SALV RH+ HGIGRSGD+ + QPKAAGSSLL KITN Sbjct: 381819 MDTNNLAHHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNV 381640 Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTL------------------------- 155 L+LD+I+ AG + A VVPMATGM+L L + Sbjct: 381639 LMLDLIRQAGAPSTAAAVVVPMATGMTLALVLRCVAKTHMKELMKEAEAVQLQRTVTKDS 381460 Query: 156 --------------------RHKRPKA------KYIIWPRIDQKSCFKSMITAGFEPVVI 189 RH R +Y+IWPRIDQK+ K + AG PV + Sbjct: 381459 TSATSAAPVQEPPMSEADRDRHDRTSLPVPATPRYVIWPRIDQKTALKCIDAAGLVPVPV 381280 Query: 190 E--------------------NVLEGDE---------------LRTDLKAVEAKVQELG- 213 + ++ G + L + V A V +G Sbjct: 381279 QLRPAVPLARSAAPCVSTNRDSLDRGQDSIGSPSTPTSSSSLFLECHVDDVAAAVNAVGG 381100 Query: 214 PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 P ++C+ STTSCFAPR+PD +A C IP++VNNAYGVQS + M + R+G Sbjct: 381099 PSQVVCVLSTTSCFAPRLPDNTVAIAQYCKKAGIPYVVNNAYGVQSRRIMTRLDAAQRLG 380920 Query: 274 RIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNG 333 R+D VQS DKNF+VPVGG+II + + ++ +Y GRAS SP +D+ IT LSLG G Sbjct: 380919 RVDFVVQSGDKNFLVPVGGSIICSGDKERCKAVAALYAGRASMSPIVDLFITALSLGRRG 380740 Query: 334 YKKLLKERKEMFSYLSNQIKKLSEAYNERLL-----------------------HTPHNP 370 + L +R + + L Q++ + E LL P N Sbjct: 380739 MQTLWSDRYKCRARLIRQLRVFARERREVLLVDDSDDDKADEDTVGGSQRTSNAVVPRND 380560 Query: 371 ISLAMTLKT--------------LDEHRDKAVTQ------LGSMLFTRQVSGARVV-PLG 409 IS+A+T++ L + VT LG+ LF V+G RV+ P Sbjct: 380559 ISVAVTMRAYGLPAAEASSSGAQLGSEQAGRVTNWAAARALGAQLFRSAVTGPRVITPAP 380380 Query: 410 SM-QTVSGYTFRGFMSHTNNY-PCAYLNAASAIGMKMQDVDLFIKRL 454 S T++G TFR + H + PC L A IGM +VD + RL Sbjct: 380379 STPTTIAGCTFRNYGMHQDREPPCPLLVIACGIGMSESEVDALMARL 380239 >contig_36 Length = 2713248 Score = 33.5 bits (75), Expect = 0.39 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = -3 Query: 212 LGPDCILCIHSTTSC-FAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGA 270 LG +LC+H T SC AP++ LA++ H +AY SS + +Q + Sbjct: 1965979 LGSSLVLCVHRTASCPSAPQLRSAPHPLALV-------HFALSAYLFFSSSFSSVNEQYS 1965821 Query: 271 RVGRI 275 R+GRI Sbjct: 1965820 RLGRI 1965806 Score = 29.6 bits (65), Expect = 5.7 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +3 Query: 353 KKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSML 395 +KLS E +L TPH P+ + + ++ +DK V L S+L Sbjct: 2655489 RKLSATSPESMLDTPHQPLHVCLRVRV---QKDKLVVPLRSLL 2655608 >contig_27 Length = 1024085 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 25 RRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMD--SNNFLGNCGV 72 R E L+R E+GKC GWD +E+ A + S+ +L +CGV Sbjct: 946640 RHGEEKLVRRHGERGKCGGGGWDPENIEVPDGATAALCSLSSLYLPHCGV 946789 >contig_34 Length = 1750858 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = -1 Query: 185 EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEE 237 E +++N +E R DL+A A+V+ + PD ++ + T+ P RLE+ Sbjct: 179959 ESALVQNAAACEETRDDLEAQ*ARVEHVSPDNVVRLVHTSRRGGVTAPCRLED 179801 Score = 29.3 bits (64), Expect = 7.4 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 203 KAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICAN 244 KAV A + P +LC +T+ APR L A +CA+ Sbjct: 544898 KAVSAASAAIVPGAVLCERLSTTNEAPRAQTALVRYAAVCAD 544773 >contig_13 Length = 649814 Score = 30.8 bits (68), Expect = 2.5 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Frame = -1 Query: 303 IQEISKMYPGRASASPSLDVLITLLSL----------GSNGYKKLLKERKEMFSYLSNQI 352 ++E+ +MY +A+ VL T LS +N + L KEM + + Sbjct: 24659 LRELRRMYTSQAALPTEFSVLKTKLSSTTPLIWVKCRSNNDFATFLPALKEMIALARREA 24480 Query: 353 KKLSEAYNERLLHTPHNPISLAMTLKTLDE 382 + S A + L N MTL+TL++ Sbjct: 24479 QYRSTATGKPLYEALFNQYESGMTLETLEK 24390 >contig_35 Length = 2113966 Score = 29.6 bits (65), Expect = 5.7 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = -2 Query: 216 CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ 268 CI S TSC + R P+R I A+ D+ + +A S+KC HL Q Sbjct: 1022730 CIALSSSGTSCESSRWPERSPRRDTI-ASPDLTAL*FSASDASSTKCRHLFSQ 1022575 >contig_29 Length = 1258350 Score = 29.6 bits (65), Expect = 5.7 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 255 YGVQSSKCMHLIQQGARVGRIDAFVQSLD 283 Y VQ ++C L+ +GAR R DAF + +D Sbjct: 1242374 YAVQRARCTVLLPRGARPYRADAFSRGVD 1242460 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,551,973 Number of Sequences: 36 Number of extensions: 303538 Number of successful extensions: 1808 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 1699 Number of HSP's gapped (non-prelim): 442 length of query: 501 length of database: 10,814,999 effective HSP length: 105 effective length of query: 396 effective length of database: 10,811,219 effective search space: 4281242724 effective search space used: 4281242724 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)