TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplace...   314   1e-85

>gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251127, whole genome shotgun
             sequence
          Length = 102005

 Score =  314 bits (805), Expect = 1e-85
 Identities = 182/454 (40%), Positives = 283/454 (62%), Gaps = 11/454 (2%)
 Frame = -3

Query: 12    LVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCG 71
             ++SP Y++    + ++  + I++LL   +   +   +  +EL + +L++MD+NNF    G
Sbjct: 24351 IISPQYIK*SQNSFQTFSNTIKILLS*RQLFPHPLPDLEIELLISQLSLMDTNNFSQKIG 24172

Query: 72    VGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGV 131
             VGEREGR+ S +V +RH+   HGIGRSG++SA QPKA GSSL+ KIT  LV D++KL G+
Sbjct: 24171 VGEREGRIIS*IVQKRHFYMSHGIGRSGNLSAEQPKAPGSSLILKITEFLVKDMLKLVGL 23992

Query: 132   HTVA-NCFVVPMATGMSLTLCFLTLRHKRP----KAKYIIWPRIDQKSCFKSMITAGFEP 186
                + N  ++P ATGM+   CFLTL   +     + KY+IW RIDQK+C K ++ A  EP
Sbjct: 23991 CKKSRNLLILPAATGMA---CFLTLMALKKNIS*EKKYVIWSRIDQKTCLKCILAANLEP 23821

Query: 187   VVIENVLEGDELRTDLKAVEAKVQELG-PDCILCIHSTTSCFAPRVPDRLEELAVICANY 245
              V+E V  GD+L +D++ +   ++       +LC+ STTSCFAPR+PD + E+  IC   
Sbjct: 23820 YVLELV*IGDKLCSDVEKLGKLLENNDFKK*VLCVFSTTSCFAPRIPDNITEIGRICFVN 23641

Query: 246   DIPHIVNNAYGVQSSKCMHLIQQG-ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQ 304
             +IPHIVNNAYG+  +K ++LI +  ++  RIDA + S DKNF+VPVGGAII G N   I+
Sbjct: 23640 NIPHIVNNAYGL*CAKIVNLINETYSKNHRIDAIISSTDKNFLVPVGGAIIYGENK*LIK 23461

Query: 305   EISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL 364
             EI++ YPGRAS SP +D+ IT LS G   ++ LL  RKE   YL  ++  +   Y ER+L
Sbjct: 23460 EINENYPGRASLSPIIDLFITFLSTGREKWE*LLNIRKENLIYLKEKLN*VLLKYEERVL 23281

Query: 365   HTPHNPISLAMTLKTLDEHRDK--AVTQLGSMLFTRQVSGARVVPLG-SMQTVSGYTFRG 421
              +  N IS+  TLK + ++     ++ +LG +L+ +++ G R++     +  +    F+ 
Sbjct: 23280 *STENSISVGFTLKNI*KN*KN*ISILELGGILYNKRIMGGRIIINNEKVLKIDNL*FKN 23101

Query: 422   FMSHTNNY-PCAYLNAASAIGMKMQDVDLFIKRL 454
             +    + Y    Y+  A AIGM+ +++D+F+ +L
Sbjct: 23100 YGCSNDFYTELPYMTVACAIGMEKKEIDMFLIKL 22999


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,813,176
Number of Sequences: 2017
Number of extensions: 252360
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 71
length of query: 501
length of database: 16,266,656
effective HSP length: 107
effective length of query: 394
effective length of database: 16,050,837
effective search space: 6324029778
effective search space used: 6324029778
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)