TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_2 178 2e-44 scaffold_12 33 0.96 scaffold_4 33 1.3 scaffold_45 31 4.8 scaffold_33 31 6.2 scaffold_113 30 8.1 >scaffold_2 Length = 3822992 Score = 178 bits (452), Expect = 2e-44 Identities = 98/215 (45%), Positives = 138/215 (64%), Gaps = 8/215 (3%) Frame = +3 Query: 85 ARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDII----KLAGVHTVANCFVV 140 A RHY HG+GRSGDI+ QPKAAGSS L K+ L LD + KL A ++ Sbjct: 704229 AFRHYGLSHGMGRSGDITEPQPKAAGSSALVKLALLLTLDALRRGSKLDAKGPAAYGILL 704408 Query: 141 PMATGMSLTLCFLTLRHKRP----KAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGD 196 P+ TGMS++L ++R K K ++W RIDQKSCFK++ +AG VV+ +EGD Sbjct: 704409 PLCTGMSISLLLASIRSKEENSETKKDIVLWSRIDQKSCFKAIHSAGLICVVVPTKIEGD 704588 Query: 197 ELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYG 256 E+ TD+ A+EA + + +L + +T+SCF PRVPD ++++A +C ++ HI+NNAYG Sbjct: 704589 EVITDIDAMEAALSK-HEGRVLAVITTSSCFTPRVPDAVDKVAKLCKVSNVYHIINNAYG 704765 Query: 257 VQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 291 +Q +K LI + VGR+DA V S DKNF+VPVG Sbjct: 704766 LQCAKTSKLINRACVVGRVDAVVCSTDKNFLVPVG 704870 Score = 149 bits (377), Expect = 9e-36 Identities = 80/196 (40%), Positives = 124/196 (63%), Gaps = 13/196 (6%) Frame = +2 Query: 287 MVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFS 346 +V GGAII + + I E+ K+Y GRAS+SP +D+ ITLLS+G NGYK+LLKER + Sbjct: 705056 VVVSGGAIIISPSKNIIGEVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTSVLE 705235 Query: 347 YLSNQIKKLSEAYNERLLHTPHNPISLAMTL------KTLDEHRD-------KAVTQLGS 393 ++++++E + ER+L P+N +S +TL K +DE + K +T G+ Sbjct: 705236 TFPERLREVAEKHGERILVCPNNTVSFGLTLDGLARPKEVDELDENYTQSTAKEITSFGA 705415 Query: 394 MLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKR 453 MLF+R VSG RVVP ++++ G F GF S TN YP AY+ AA AIG+ + +++ F R Sbjct: 705416 MLFSRCVSGTRVVPRSQLKSIGGQDFIGFGSSTNEYPHAYMTAACAIGVSIFEIEEFYVR 705595 Query: 454 LDRCLKAVRKERSKES 469 LD+ L ++++ K++ Sbjct: 705596 LDKTLTEFKRKKKKKA 705643 Score = 43.5 bits (101), Expect = 0.001 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 12/65 (18%) Frame = +1 Query: 40 KCPENGWDESTLELFLHELAIMDSNN----FLGN--------CGVGEREGRVASALVARR 87 + PE GW + ++ L + +D+NN GN CGVGEREGRV S+LV++R Sbjct: 703774 RLPEYGWSDVQIQSLLFLFSTLDTNNKTLATCGNNEEDDTRWCGVGEREGRVFSSLVSQR 703953 Query: 88 HYRFI 92 +F+ Sbjct: 703954 *VQFM 703968 >scaffold_12 Length = 1636732 Score = 33.5 bits (75), Expect = 0.96 Identities = 30/127 (23%), Positives = 53/127 (41%) Frame = +3 Query: 352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSM 411 IK S +++ +L NP + + L SM+ TR ++G GS Sbjct: 851868 IKSSSSSFSSTMLLRDLNPSQIEAVTQPLRVQHQNDDPSTTSMVVTRVIAGP-----GSG 852032 Query: 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDD 471 +T T G++ + Y A+ + +RL+R L+ ++ + KE DD Sbjct: 852033 KTKVLTTRIGYLLQEDPY-----GKVLAVTFTRKAAGEMKERLERLLREQQQFKEKEEDD 852197 Query: 472 NYDKTED 478 N + T+D Sbjct: 852198 NNNMTDD 852218 >scaffold_4 Length = 3206981 Score = 33.1 bits (74), Expect = 1.3 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Frame = +2 Query: 165 IIWPRIDQKSCFKSMITA-----GFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILC 219 ++ P + S S+I A G E +V +++E D R L+ VEA G +CI Sbjct: 743567 LLLPPVSALSSSSSLIIANISQTGCEDIVYHDMIERDFSRAQLQLVEALG---GKECIDA 743737 Query: 220 IHSTTS 225 +HSTTS Sbjct: 743738 LHSTTS 743755 >scaffold_45 Length = 464023 Score = 31.2 bits (69), Expect = 4.8 Identities = 28/127 (22%), Positives = 53/127 (41%) Frame = -2 Query: 352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSM 411 +K S +++ +L NP + + L SM+ TR ++G GS Sbjct: 75003 LKSSSSSFSSTMLLRDLNPSQIEAVTQPLRVQHQNDDPSTTSMVVTRVIAGP-----GSG 74839 Query: 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDD 471 +T T G++ + Y A+ + +RL+R L+ ++ + KE +D Sbjct: 74838 KTKVLTTRIGYLLQEDPY-----GKVLAVTFTRKAAGEMKERLERLLREQQQFKEKEEED 74674 Query: 472 NYDKTED 478 N + T+D Sbjct: 74673 NNNMTDD 74653 >scaffold_33 Length = 615088 Score = 30.8 bits (68), Expect = 6.2 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = -1 Query: 414 VSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLD---RCLKAVRKERSKESD 470 +S F+ ++HTNN A A+ +D+D F D +K S++ D Sbjct: 5821 ISLINFKDKVAHTNNIKMAKKGKKQAVPALEEDLDRFAGSSDEDEEIMKPPAPSASEQED 5642 Query: 471 DNYDKTEDVD 480 N+D E+ D Sbjct: 5641 QNHDADEEND 5612 >scaffold_113 Length = 60858 Score = 30.4 bits (67), Expect = 8.1 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = -1 Query: 414 VSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLD---RCLKAVRKERSKESD 470 +S F+ ++HTNN A A+ +D+D F D +K S++ D Sbjct: 54183 ISLINFKDKVAHTNNTKMAKKGKKQAVPALEEDLDRFAGSSDEDEEIMKPPAPSASEQED 54004 Query: 471 DNYDKTEDVD 480 N+D E+ D Sbjct: 54003 QNHDADEEND 53974 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,264,244 Number of Sequences: 271 Number of extensions: 627905 Number of successful extensions: 2956 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 2698 Number of HSP's gapped (non-prelim): 576 length of query: 501 length of database: 26,846,802 effective HSP length: 111 effective length of query: 390 effective length of database: 26,816,721 effective search space: 10458521190 effective search space used: 10458521190 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 66 (30.0 bits)