TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 431 e-123 gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ... 31 1.9 gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced ... 30 3.2 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 29 9.3 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 431 bits (1107), Expect(2) = e-123 Identities = 223/444 (50%), Positives = 305/444 (68%), Gaps = 25/444 (5%) Frame = +3 Query: 40 KCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSG 99 + P+ GWD+ + FL+++A MDSNN++ N GVGEREGR+ S +V RH+ HGIGRSG Sbjct: 3466932 RLPDKGWDDQFIRWFLNDIAKMDSNNYVENAGVGEREGRIHSRIVQERHFGLAHGIGRSG 3467111 Query: 100 DISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTL-RHK 158 DIS QPKAAGSSL+ ++ + LV+D + +AG++++ C V+PMATGM++ L +T +H Sbjct: 3467112 DISEQQPKAAGSSLVQRLCSYLVMDSMSVAGLNSIGECLVLPMATGMTIALTLMTFTKHC 3467291 Query: 159 RPK-AKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCI 217 RP AKY+IWPRIDQKSC K++ TAG PVVIENVL+GD + TDL+A+E K+ ELGP+ + Sbjct: 3467292 RPPTAKYVIWPRIDQKSCLKAIATAGLVPVVIENVLQGDVITTDLEAIENKIIELGPENV 3467471 Query: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQ---QGARVGR 274 +C++STTSCFAPRVPDR+ E++ +C Y++ HI+NNAYG+Q SK +H I Q + R Sbjct: 3467472 VCVYSTTSCFAPRVPDRIIEISELCYKYNVGHIINNAYGLQCSKIVHAINESCQSDKQRR 3467651 Query: 275 IDAFVQSLDKNFMVPVGGAIIAGFND-----------------SFIQEISKMYPGRASAS 317 +DA +QS DKN+MVPVGGAII + I ISK YPGRA+ S Sbjct: 3467652 VDAIIQSTDKNYMVPVGGAIITSPKKEKQQHKQKEKGEEEQQVNLIDLISKNYPGRANGS 3467831 Query: 318 PSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY-NERLLHTPHNPISLAMT 376 P LD+ ITLLS+G GYK+LL ERK++ +Y +Q+ LS + N RLL TP N ISL + Sbjct: 3467832 PILDLFITLLSMGRQGYKELLDERKQLLTYFRDQLASLSLQFPNCRLLDTPDNRISLGLA 3468011 Query: 377 LKTLDEHRDK-AVTQLGSMLFTRQVSGARVVPL-GSMQTVSGYTFRGFMSHTNNYPCAYL 434 L + K +++ +GS LF+R SGARV+ L GS ++V+G F + SH NNY +YL Sbjct: 3468012 LAVASGDQQKLSISMIGSKLFSRSCSGARVIELPGSKKSVAGLDFESYGSHINNYHSSYL 3468191 Query: 435 NAASAIGMKMQDVDLFIKRLDRCL 458 A AIG+ D+D F+KRL + L Sbjct: 3468192 TVACAIGITKDDIDTFMKRLKKIL 3468263 Score = 31.2 bits (69), Expect(2) = e-123 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +2 Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLL 36 MN+++ + L++P+Y+ Q +A + HLI +LL Sbjct: 3466718 MNQKNLEICKSLINPSYIEQSSQAINQYNHLINVLL 3466825 >gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun sequence Length = 2485436 Score = 31.2 bits (69), Expect = 1.9 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 13/93 (13%) Frame = +1 Query: 307 SKMYPGRASASPSL-DVLITLLSLGSNGYKKLLKERKEMFSYLSN-----------QIKK 354 SK+Y + + + L L LG +KKL+K ++EM+ Y + Q ++ Sbjct: 1206310 SKIYEDHPLTTKEIKECLADLKVLGKTDFKKLIKWKQEMYKYKEDLDGIKEEAKEKQEEE 1206489 Query: 355 LSEAYNERLLHTPHNPISLAMTL-KTLDEHRDK 386 E E H P+ P L L + L E+ DK Sbjct: 1206490 AKEEKGELDPHRPYTPEELEDNLDRLLQENMDK 1206588 >gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EJPB12P01AWP9W-5, whole genome shotgun sequence Length = 629417 Score = 30.4 bits (67), Expect = 3.2 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 459 KAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDTYQD 498 K +E +E DD+ D ED ++EE + +D ++L + D Sbjct: 9619 KVEEEEEEEEDDDDDDDDEDDEVEEESDSVDEIVLFLFDD 9738 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 28.9 bits (63), Expect = 9.3 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +2 Query: 364 LHTPHN---PISLAMTLKTLDEHRDKAVTQLGS-MLFTRQVSGARVVPLGSMQTVSGY 417 ++TP N +S T+KT+D + L + LFT +PLG +Q+V+GY Sbjct: 978674 INTPRNGASSLSFTFTIKTIDGQTKTSTQSLSTGALFT--------LPLGEVQSVAGY 978823 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,169,089 Number of Sequences: 25 Number of extensions: 231432 Number of successful extensions: 998 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 917 Number of HSP's gapped (non-prelim): 139 length of query: 501 length of database: 10,339,736 effective HSP length: 104 effective length of query: 397 effective length of database: 10,337,136 effective search space: 4103842992 effective search space used: 4103842992 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)