TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...   452   e-127

>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score =  452 bits (1163), Expect = e-127
 Identities = 232/438 (52%), Positives = 314/438 (71%), Gaps = 18/438 (4%)
 Frame = +3

Query: 37      EKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIG 96
               +K K P  G+++  +EL L+E+++MDSNNF+ N GVGEREGR+ S LV +RHY F HGIG
Sbjct: 3095895 KKKKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIG 3096074

Query: 97      RSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVH--TVANCFVVPMATGMSLTLCFLT 154
               RSGDI+  QPKAAGSSL+ K+T+SLVLD +KLAG+   +++NC ++PMATGM+L L  LT
Sbjct: 3096075 RSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCLLLPMATGMTLALTMLT 3096254

Query: 155     LRHKRPKAK-YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELG 213
               L+      K Y++WPRIDQKSC KS+ITAG  P+VI N L+GD +RTDL A+E K++ELG
Sbjct: 3096255 LKSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIRTDLVAIEDKIKELG 3096434

Query: 214     PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273
                D ILC+ STTSCFAPRVPD++ E++ IC  Y+I HI+NNAYG+Q SK +H I Q  ++G
Sbjct: 3096435 VDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKILHNISQACKLG 3096614

Query: 274     RIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNG 333
               R+DAF+QS DKNFMVPVGGAII+G N  FI +IS+ YPGRA++SP LDV ITLLS+G  G
Sbjct: 3096615 RVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQG 3096794

Query: 334     YKKLLKERKEMFSYLSNQIKKLSEAYNERLLHT-PHNPISLAMTLKTLDEHRDKAV---- 388
               +  LLKERKE+  Y + Q+ K +   NE+LL+T   N IS A+TL + + + ++ +    
Sbjct: 3096795 WLNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFALTLSSNNFNNNEEIISNN 3096974

Query: 389     --------TQLGSMLFTRQVSGARVVPLGSMQ--TVSGYTFRGFMSHTNNYPCAYLNAAS 438
                       + +GS LF+R  SG+RV+ L S +   + G  F  + SH +NY  +YL  A 
Sbjct: 3096975 NNNNNNTFSMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHIDNYSTSYLTVAC 3097154

Query: 439     AIGMKMQDVDLFIKRLDR 456
               AIG+   ++D FI+RL +
Sbjct: 3097155 AIGITKLEIDTFIQRLSK 3097208



 Score = 32.3 bits (72), Expect = 0.91
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
 Frame = +3

Query: 317     SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSN-----QIKKLSEAYNERLLH----TP 367
               S SL   I LLS  S    KL +  K +F+ LSN      I KLS  Y E+L      TP
Sbjct: 1585566 SQSLSSYIILLSKHSKTTNKLAQLSKRIFNLLSNFSNNINILKLSSIYFEKLKDFEQITP 1585745

Query: 368     HNPISLAMTLKTLDEHRDKAVT 389
                 PI+  +  K+L +      T
Sbjct: 1585746 PIPITTTVEKKSLTKKSTTTTT 1585811



 Score = 29.6 bits (65), Expect = 5.9
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
 Frame = +1

Query: 338     LKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISL-AMTLKTLDEHRDKAVTQLGSMLF 396
               +K+RKE+     ++ K +S+   ++L  +  N  +L  + LK L        T++ S + 
Sbjct: 5001799 IKKRKEI-----SEQKTISKEEQDQLDMSEWNSYNLDPLILKGLRSLGFSKPTEIQSSVI 5001963

Query: 397     TRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDR 456
                  VS    V +G+ QT SG T                    A G+ M  V   ++ L +
Sbjct: 5001964 PVAVSSGYDV-IGAAQTGSGKTL-------------------AFGIPM--VQRILQHLRK 5002077

Query: 457     CLKAVRKERSKESDDNYDKTEDVDIEE 483
                 + V  + +K+ +DN D+ EDV+ EE
Sbjct: 5002078 HGQNVENKANKQQNDNDDENEDVEEEE 5002158


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,379,713
Number of Sequences: 6
Number of extensions: 196870
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 157
length of query: 501
length of database: 11,314,357
effective HSP length: 105
effective length of query: 396
effective length of database: 11,313,727
effective search space: 4480235892
effective search space used: 4480235892
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)