TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig1068 | | 1 to 155071 313 2e-85 Cf_Contig606 | | 1 to 135677 33 0.44 Cf_Contig1069 | | 1 to 371363 33 0.76 Cf_Contig991 | | 1 to 48311 32 1.3 Cf_Contig655 | | 1 to 55353 32 1.7 Cf_Contig1056 | | 1 to 310674 30 4.9 Cf_Contig1012 | | 1 to 160251 30 6.4 Cf_Contig912 | | 1 to 41032 29 8.4 >Cf_Contig1068 | | 1 to 155071 Length = 155071 Score = 313 bits (803), Expect = 2e-85 Identities = 201/541 (37%), Positives = 284/541 (52%), Gaps = 87/541 (16%) Frame = -3 Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60 M+ E LVS Y+ G E+ ++ +R L+ + +CP+ G ++ ++L L +LA Sbjct: 18872 MDERGLQLAEDLVSAHYLAAGRESLQATARTLRSLIAQRRCPDVGLSDAVIQLLLRQLAA 18693 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRVASALV +RH+ F HGIGRSGD+++ QPKAAGSSLL K+TN Sbjct: 18692 MDTNNFAAHVGGGEREGRVASALVRQRHFDFTHGIGRSGDLASEQPKAAGSSLLYKLTNI 18513 Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTL---CFLTLRHK------------------- 158 +VLD+I+LAG + A VVPMATGM+L L C R K Sbjct: 18512 MVLDLIRLAGAPSTAAAVVVPMATGMTLALVLRCVAKTRVKEVDAQQQTAATTTGTTASP 18333 Query: 159 RPKAKYIIWPRIDQKSCFKSMITAGFEPVVIE------------NVLEGDE--------- 197 R +Y++WPRIDQK+ K + +AG P+ +E DE Sbjct: 18332 RVTPRYVVWPRIDQKTALKCIDSAGLLPLPVELRPAPPLTRSSAEASSTDEGGPAASSSS 18153 Query: 198 --LRTDLKAVEAKVQEL-GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNA 254 L D++ + A + + GP ++C+ STTSCFAPR+PD +A C + IP++VNNA Sbjct: 18152 LFLHCDVEDIAATINAVGGPAHVVCVLSTTSCFAPRLPDNTVAIARYCKEHAIPYVVNNA 17973 Query: 255 YGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRA 314 YGVQS + M I R+GR+D VQS DKNF+VPVGGA++ + + +Y GRA Sbjct: 17972 YGVQSRRIMTRIDAAQRLGRVDYVVQSSDKNFLVPVGGAVVTSSSAERCNAAAALYAGRA 17793 Query: 315 SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL---------- 364 SASP +D+ IT LSLG G ++L ER L +Q+ ++A E +L Sbjct: 17792 SASPIIDLFITALSLGRRGMQELWAERYRCRRRLVDQLCGFAKARGEVVLVDDGEGALSG 17613 Query: 365 ----------------------HTPHNPISLAMTLKTL------DEHRDKAVTQLGSMLF 396 P N IS+A+T++ D+ A LG+ LF Sbjct: 17612 EEDAPAAAGTQAKDKKQQQQQQQQPRNDISVAVTMRHFGAAASDDDTTWSAARALGAQLF 17433 Query: 397 TRQVSGARVVPLG--SMQTVSGYTFRGFMSHTNNYP-CAYLNAASAIGMKMQDVDLFIKR 453 R V+G RVV ++ ++G F + H P C L A IGM M +V+ ++R Sbjct: 17432 RRAVTGPRVVVPAPRTVTKIAGCDFHNYGMHQEGTPACPLLVVACGIGMTMAEVEGLMER 17253 Query: 454 L 454 L Sbjct: 17252 L 17250 >Cf_Contig606 | | 1 to 135677 Length = 135677 Score = 33.5 bits (75), Expect = 0.44 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -3 Query: 240 VICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNF--MVPVGGAIIAG 297 V NYDIPHI NA V+ S+ I++G + + + ++ + +V GA G Sbjct: 13179 VAAKNYDIPHITRNAVPVEPSQIAEFIKRGEDMSKAEVTFHAMQAVYRQLVVEYGATFGG 13000 Query: 298 FNDSFIQ 304 S ++ Sbjct: 12999 LLKSILR 12979 >Cf_Contig1069 | | 1 to 371363 Length = 371363 Score = 32.7 bits (73), Expect = 0.76 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 417 YTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVR 462 +++ G SHT+ C +LN+ ++ + + V LFI CL A R Sbjct: 365179 HSYTGTTSHTHT*ICTHLNSCHSLSLPSRRVSLFIHTTRPCLSAER 365316 Score = 29.6 bits (65), Expect = 6.4 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -3 Query: 153 LTLRHKRPKAKYIIWPRIDQKSC 175 LT H RP A++++WP + C Sbjct: 222237 LTQTHSRPAARFVVWPGVQSLRC 222169 >Cf_Contig991 | | 1 to 48311 Length = 48311 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = -2 Query: 49 STLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKA 108 ST L LH++A+ +CGVG R GR L + + IG G ++ + A Sbjct: 22774 STRHLVLHQVAVQQVQQRKRSCGVGSRRGR-GQRLQQEGRHASLRDIGSEGHLNLHKTDA 22598 Query: 109 A 109 A Sbjct: 22597 A 22595 >Cf_Contig655 | | 1 to 55353 Length = 55353 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +1 Query: 312 GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 G AS + +LITLL L SN + + + RKE F S K L Sbjct: 265 GARDASTEMHILITLLVLHSNKERHISQRRKEQFRSFSPSKKNL 396 >Cf_Contig1056 | | 1 to 310674 Length = 310674 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = -1 Query: 206 EAKVQELGPDCILCIHSTT----SCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSK 261 EA V +L +C S+ SCF+ PD+ +AV A + ++ YG +S++ Sbjct: 244989 EASVLQLPSSSRICTSSSLLACRSCFSSATPDKPVAMAVDGAVVALMGLLPFVYGTESTR 244810 Query: 262 CMHLIQQGARVG 273 L G VG Sbjct: 244809 MFPLRSIGVEVG 244774 >Cf_Contig1012 | | 1 to 160251 Length = 160251 Score = 29.6 bits (65), Expect = 6.4 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Frame = +1 Query: 24 ARRSHEHLIRLLLEKGKCPENGW---DESTLELFLHELAIMDSNNFLGNCGVGEREGRVA 80 AR H++ +L G + G + LE +H LA +++ + + N ++GRVA Sbjct: 117754 AREVGAHVVLQVLRDGALAQRGRGIRNAHVLEELVHLLAELEAMDEVAN-----KDGRVA 117918 Query: 81 SALVARR--HYRFIHGIGRS 98 SA ARR + G+GR+ Sbjct: 117919 SAAQARRDGELEGLDGVGRA 117978 >Cf_Contig912 | | 1 to 41032 Length = 41032 Score = 29.3 bits (64), Expect = 8.4 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%) Frame = -2 Query: 70 CGVGEREGRVASALVARRHY----------RFIHGIGRSGD-ISAVQPKAAGSSLLNKIT 118 CGVGE + R +A +RR Y R + G GR G +A P+AAG++ + + Sbjct: 9669 CGVGEEDTRRGAATHSRRVYVSVVDHLWRRRRVAGPGRGGGWHAACAPQAAGAAAVQRAG 9490 Query: 119 NSLVL 123 L L Sbjct: 9489 KMLRL 9475 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,559,192 Number of Sequences: 1089 Number of extensions: 327544 Number of successful extensions: 1992 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 53 Number of HSP's that attempted gapping in prelim test: 1707 Number of HSP's gapped (non-prelim): 710 length of query: 501 length of database: 12,349,441 effective HSP length: 105 effective length of query: 396 effective length of database: 12,235,096 effective search space: 4845098016 effective search space used: 4845098016 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)