TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                      149   3e-36

>T.congo.pschr.11
          Length = 4797796

 Score =  149 bits (376), Expect = 3e-36
 Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 47/279 (16%)
 Frame = -3

Query: 1       MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISL 60
               M+ + L   + +++  YI   ++      + + ++L  ++ P+ G ND  IEL+L++I++
Sbjct: 3680408 MDERALHLAESIVEPRYIQAGVESQRSVERTVRSILAQRRCPDEGLNDCAIELLLHQIAM 3680229

Query: 61      MDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHS 120
               MD+NNF  ++G GEREGR+ S LV++R+Y   HG+GRSGDI   QPKAAGSSL+ KLT+ 
Sbjct: 3680228 MDTNNFTAHVGAGEREGRVASTLVQRRYYNLTHGVGRSGDICSDQPKAAGSSLLYKLTNH 3680049

Query: 121     LVLDAMKLAG-------------------LEQSSLSNCXXXXXXXXXXXXXXXXXXK--- 158
               +VLD ++ AG                   L   S+++                   +   
Sbjct: 3680048 MVLDLLRQAGTPSLASAAVIPMATGMTISLVLRSIAHHRDQETRTRATEAAVDDQRRSDC 3679869

Query: 159     ---SINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIP---------------------N 194
                  S+     R+V+W R+DQK+ LK I  +G IP+V+P                     +
Sbjct: 3679868 GATSVAPVAPRFVIWTRVDQKTALKCIELSGFIPVVVPLRRASVLRRYRDEDKDGPGAVS 3679689

Query: 195     QLDGDMIRTDLVAIEDKIKEL-GVDNILCVFSTTSCFAP 232
                L    ++  +  +   I+ + G  N+LCV STTSCFAP
Sbjct: 3679688 SLHSYFLQAHVDDVAASIERVGGPTNVLCVLSTTSCFAP 3679572



 Score =  105 bits (261), Expect = 7e-23
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 24/278 (8%)
 Frame = -1

Query: 223     VFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKILHNISQACKLGRVDAFI 282
               +F   +    R P  ++E  ++C    +  ++   + +Q   I+  I  A +LGRVDA +
Sbjct: 3679675 IFCRLTSMMSRRPLSVLEDPQMCCVCCLQLVV--LHRVQSRSIMQRIDAAIRLGRVDAIV 3679502

Query: 283     QSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQGWLNLLK 342
               QS DKNF+VPVGGA++SG  +E + + +  Y GRA++SP++D+FIT LS+G+ G+  L  
Sbjct: 3679501 QSGDKNFLVPVGGAVLSGGRTE-VARATSLYAGRASASPVVDLFITALSLGRSGFQRLWD 3679325

Query: 343     ERKELLIYFNEQLSKFALENNEKLL------------------NTINENKISFA-----X 379
                R  L     ++L  FA    E LL                  N  N + +S A      
Sbjct: 3679324 ARYFLRELLEQRLRDFARAREETLLDEFDPQGDMHGVHDDGSCNRHNSSGLSAATDTRRG 3679145

Query: 380     XXXXXXXXXXXXXXXXXXXXXXXXXXMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNN 439
                                          +G++LF  + +G RV+ L + +K+ + G  F N
Sbjct: 3679144 DAKYALRNDISFAITMRNIGGPSEAAAVGARLFRGAVTGPRVV-LPNEEKISLCGHLFRN 3678968

Query: 440     YGSHIDNY-STSYLTVACAIGITKLEIDTFIQRLSKLF 476
               YG H D+  +   L +AC +G+   + +  ++RL +++
Sbjct: 3678967 YGMHTDDTPACPLLVLACGVGMKIEDAEGLMKRLEEVW 3678854


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,031,617
Number of Sequences: 11
Number of extensions: 132104
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 152
length of query: 479
length of database: 7,429,315
effective HSP length: 102
effective length of query: 377
effective length of database: 7,428,193
effective search space: 2800428761
effective search space used: 2800428761
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)