TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.837 of Sphaeroforma arctica JP610                          112   3e-24

>supercont1.837 of Sphaeroforma arctica JP610
          Length = 39100

 Score =  112 bits (279), Expect = 3e-24
 Identities = 56/110 (50%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
 Frame = -3

Query: 270   SQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEF-IDQISRNYPGRANSSPILDVFIT 328
             SQA +LGRVDA++QSTDKNF+VPVGG++I+GP+    +  + + YPGRA+ +P LDVFIT
Sbjct: 21311 SQAMRLGRVDAYVQSTDKNFLVPVGGSVIAGPDKHLKVADVCKTYPGRASGTPTLDVFIT 21132

Query: 329   LLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFA 378
             LLSMG  G+ + L +RKE+     +++S+ A ++ E+LL+T   N IS A
Sbjct: 21131 LLSMGSNGYKHRLLQRKEIYEILKQKMSEVAAKHGERLLHT-PHNPISLA 20985



 Score = 90.1 bits (222), Expect = 1e-17
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = -3

Query: 199   DMIRTDLVAIEDKIKELG-VDNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNA 257
             D +RTDL AIED IK  G  + +LCV STTSCFAPR  DK+ EI+ +C+R  I H++NNA
Sbjct: 21743 DELRTDLPAIEDAIKRAGGPEKVLCVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNA 21564

Query: 258   YGLQCSKILHNISQAC 273
             YG+  S I+H++++ C
Sbjct: 21563 YGVTSSLIMHHVNEVC 21516



 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 46/106 (43%), Positives = 63/106 (59%)
 Frame = -1

Query: 89    YGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCXXXXXXXXX 148
             +   HGIGRSGDI+  QPKAAGSSL+ KLT   +L+ +KL+G  ++   +C         
Sbjct: 22588 HSMGHGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGATRT--KSCYVFPLATGM 22415

Query: 149   XXXXXXXXXKSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPN 194
                      K+ N     +V+WPRIDQK+CLK+I+  G IP+VI N
Sbjct: 22414 AVVMCLLALKAKNP-TATHVVWPRIDQKTCLKAIVATGFIPVVIEN 22280



 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 35/73 (47%), Positives = 44/73 (60%)
 Frame = -1

Query: 25    TSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLV 84
             TS F      L I ++LP  G++D  I+L L ++SLMDSNNF E  G GEREGRI S LV
Sbjct: 23404 TSAFIDTFVVLCIQRRLPVGGWDDATIKLFLQDLSLMDSNNFNEYSGAGEREGRIESSLV 23225

Query: 85    EKRHYGFAHGIGR 97
                H G+   + R
Sbjct: 23224 RDMHNGYVSAV*R 23186



 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 27/68 (39%), Positives = 44/68 (64%)
 Frame = -3

Query: 407   IGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHIDNYSTSYLTVACAIGITKLEID 466
             +G+ LF R  SG+RV+     K  ++ G+ F  YG+H D Y T YLTVA A+G+T+ +++
Sbjct: 20516 LGAMLFRRGVSGARVVSADDVK--VVAGVSFKGYGAHADAYFTPYLTVAAALGMTRKDVE 20343

Query: 467   TFIQRLSK 474
               ++R+ K
Sbjct: 20342 QVVERIDK 20319


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,842,695
Number of Sequences: 15618
Number of extensions: 744066
Number of successful extensions: 2767
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 1142
length of query: 479
length of database: 40,529,447
effective HSP length: 113
effective length of query: 366
effective length of database: 38,764,613
effective search space: 14187848358
effective search space used: 14187848358
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)