TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_58                                                      201   2e-88
PHYCAscaffold_9                                                        31   3.6  
PHYCAscaffold_3                                                        30   6.1  

>PHYCAscaffold_58
          Length = 327658

 Score =  201 bits (511), Expect(2) = 2e-88
 Identities = 107/258 (41%), Positives = 153/258 (59%), Gaps = 7/258 (2%)
 Frame = -3

Query: 1      MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISL 60
              MN K+    + LI  +Y+ Q +        L+ TLL  ++LP+ G++D  +E++L  +S 
Sbjct: 326858 MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEGWDDASVEMLLQTLSA 326679

Query: 61     MDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHS 120
              MDSNNF  + G GERE R++S +V +RH+  AHG+GRSGD+   QPKAAGSSL+ +L +S
Sbjct: 326678 MDSNNFQGSAGAGEREARVFSPMVARRHFRLAHGVGRSGDVAAVQPKAAGSSLLVQLANS 326499

Query: 121    LVLDAMKLAGLEQSSLSNCXXXXXXXXXXXXXXXXXXKSINANNKRYVLWPRIDQKSCLK 180
              L  D ++LAG+     +                        A+   YV+WPRIDQKSC K
Sbjct: 326498 LAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLNELKPGAH---YVIWPRIDQKSCFK 326328

Query: 181    SIITAGLIPIVIPNQLD-------GDMIRTDLVAIEDKIKELGVDNILCVFSTTSCFAPR 233
              SI+ AGL P+V+PN L        G  ++TDL  + + I + G D+IL V STTSCFAPR
Sbjct: 326327 SILAAGLTPLVLPNVLVEEEDGRLGGYLKTDLAGMAELIDQYGADSILAVMSTTSCFAPR 326148

Query: 234    VPDKIIEISEICKRYNIG 251
                D + EI+++C+  NIG
Sbjct: 326147 AYDSVQEIAKMCQDRNIG 326094



 Score =  145 bits (365), Expect(2) = 2e-88
 Identities = 92/292 (31%), Positives = 136/292 (46%), Gaps = 69/292 (23%)
 Frame = -1

Query: 252    HIINNAYGLQCSKILHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISR 311
              H+INNAYG+Q SK +H +  A ++GRVDA +QS DKNFMVPVGGAI+   + + +D++++
Sbjct: 326020 HVINNAYGVQASKCVHEVELAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAK 325841

Query: 312    NYPGRANSSPILDVFITLLSM----------------------GKQGWLNLLKERKELLI 349
               YPGRA+++P LD FIT+L M                      GK G+  LL ERK L +
Sbjct: 325840 FYPGRASATPTLDFFITMLQMVSSPEIHVI*LLSSSSQLVCYQGKSGYRQLLDERKHLAV 325661

Query: 350    YFNEQLSKFALENNEKLLNTINEN----------------------KISFAXXXXXXXXX 387
              Y  E+L   A E  E++L   +                        +ISFA         
Sbjct: 325660 YMREKLESLAAEEGERVLRVSSNEVLVGCVLEWLGISAFLTLKCCAQISFA------LTL 325499

Query: 388    XXXXXXXXXXXXXXXXXXMIGSKLFSRSCSGSRVIDLKSN-------------------- 427
                                 +GS LFSR  SG+R +   S+                    
Sbjct: 325498 GTLCSDVMDKKEKSQQLTFLGSMLFSRGVSGAR*VYTCSDLIGWFACCY*PSDF*DHCYR 325319

Query: 428    -----KKLLIGGLEFNNYGSHIDNYSTSYLTVACAIGITKLEIDTFIQRLSK 474
                    +  I G +F+++G+H D +  +Y+T ACA+G+ + E+D  I +L K
Sbjct: 325318 VVSCLDRKTIAGHDFDSFGAHYDEFPVAYVTFACALGMRRDEVDLLITKLRK 325163


>PHYCAscaffold_9
          Length = 1114135

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 72     VGEREGRIYSGLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDA-MKLAG 130
              +G  EGR+Y  L+E +H      IGR G   E + +  G +     T SL L   + L G
Sbjct: 310448 LGGSEGRVYQSLIEIKHQTLLVSIGRRGRGQEARTQVNGVA-----TLSLRLPGRLTLVG 310284

Query: 131    LEQSSL 136
              L QS L
Sbjct: 310283 LVQSLL 310266


>PHYCAscaffold_3
          Length = 1611504

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 89      YGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLS 137
               +GF+H   RSGD+T  QP  A  + I   T S +   + L   E+ S S
Sbjct: 1429722 WGFSHNNRRSGDVT--QPAGASCATISVATRSPLSTRIHLVSEEEMSFS 1429862


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,663,729
Number of Sequences: 917
Number of extensions: 373254
Number of successful extensions: 1577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 362
length of query: 479
length of database: 21,341,249
effective HSP length: 109
effective length of query: 370
effective length of database: 21,241,296
effective search space: 7859279520
effective search space used: 7859279520
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)