TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium transferase [Dictyostelium discoideum AX4] (479 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig6577 | | 1 to 12105 176 3e-44 >Lt_contig6577 | | 1 to 12105 Length = 12105 Score = 176 bits (446), Expect = 3e-44 Identities = 120/375 (32%), Positives = 177/375 (47%), Gaps = 64/375 (17%) Frame = -3 Query: 166 RYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIRT---------------------- 203 RYV+WPRIDQK+ LK I AGLIP+ + + + R+ Sbjct: 6052 RYVIWPRIDQKTALKCIDAAGLIPVPVQLRPAVTLARSADPWVSANRDSLGRDKGSTGSP 5873 Query: 204 ------DLVAIEDKIKEL--------GVDNILCVFSTTSCFAPRVPDKIIEISEICKRYN 249 + +E ++ ++ G ++CV STTSCFAPR+PD + I++ CK Sbjct: 5872 VTPTSSSSLFLECRVDDVAAAVNAVGGPSQVVCVLSTTSCFAPRLPDNTVGIAQYCKEAG 5693 Query: 250 IGHIINNAYGLQCSKILHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQI 309 I +++NNAYG+Q +I+ + A +LGRVD +QS DKNF+VPVGG+IIS + + Sbjct: 5692 IPYVVNNAYGVQSRRIMTRLDAAQRLGRVDFVVQSGDKNFLVPVGGSIISSSDKARCQAV 5513 Query: 310 SRNYPGRANSSPILDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNEKLL-- 367 + Y GRA+ SPI+D+FIT LS+G++G L +R QL +FA E E LL Sbjct: 5512 AALYAGRASMSPIVDLFITALSLGRRGMQALWSDRYRCRARLIRQLREFARERREVLLVD 5333 Query: 368 ------NTIN-----------ENKISFAXXXXXXXXXXXXXXXXXXXXXXXXXXXM---- 406 +T++ N IS A + Sbjct: 5332 DTDDKADTVSGSKTIPGTVTARNDISVAVTMRTYGLPTAKVGSSGVQRESAQVEKVANWA 5153 Query: 407 ----IGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHID-NYSTSYLTVACAIGIT 461 G++LF + +G RVI + I G F NYG H D L +AC IG++ Sbjct: 5152 AARAFGAQLFRSAVTGPRVITPAPSTPTTIAGCTFRNYGMHQDWAPPCPLLVIACGIGMS 4973 Query: 462 KLEIDTFIQRLSKLF 476 + E+D + RL L+ Sbjct: 4972 EAEVDALMARLRDLW 4928 Score = 119 bits (297), Expect = 6e-27 Identities = 57/130 (43%), Positives = 85/130 (65%) Frame = -3 Query: 1 MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISL 60 M+ ++L+ + + YID + ++L +L ++ P+ D IELIL ++SL Sbjct: 6691 MDDRSLKLAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEALTDAAIELILRQLSL 6512 Query: 61 MDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHS 120 MD+NNF ++G GEREGR+ S LV RH+ HGIGRSGD+ +QPKAAGSSL+ K+T+ Sbjct: 6511 MDTNNFAHHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNV 6332 Query: 121 LVLDAMKLAG 130 L+LD ++ AG Sbjct: 6331 LMLDLLRQAG 6302 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.319 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,768,059 Number of Sequences: 7267 Number of extensions: 171203 Number of successful extensions: 643 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 342 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 288 Number of HSP's gapped (non-prelim): 397 length of query: 479 length of database: 10,532,946 effective HSP length: 103 effective length of query: 376 effective length of database: 9,784,445 effective search space: 3678951320 effective search space used: 3678951320 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)