TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplace...   326   4e-89

>gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251127, whole genome shotgun
             sequence
          Length = 102005

 Score =  326 bits (835), Expect = 4e-89
 Identities = 205/476 (43%), Positives = 282/476 (59%), Gaps = 8/476 (1%)
 Frame = -3

Query: 5     NLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISLMDSN 64
             NL+    +I   YI  +      F+  ++ LL  ++L      D  IEL+++++SLMD+N
Sbjct: 24372 NLDLSSHIISPQYIK*SQNSFQTFSNTIKILLS*RQLFPHPLPDLEIELLISQLSLMDTN 24193

Query: 65    NFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLD 124
             NF + IGVGEREGRI S +V+KRH+  +HGIGRSG+++ +QPKA GSSLI K+T  LV D
Sbjct: 24192 NFSQKIGVGEREGRIIS*IVQKRHFYMSHGIGRSGNLSAEQPKAPGSSLILKITEFLVKD 24013

Query: 125   AMKLAGLEQSSLSNCXXXXXXXXXXXXXXXXXXKSINANNKRYVLWPRIDQKSCLKSIIT 184
              +KL GL + S +                    K+I +  K+YV+W RIDQK+CLK I+ 
Sbjct: 24012 MLKLVGLCKKSRNLLILPAATGMACFLTLMALKKNI-S*EKKYVIWSRIDQKTCLKCILA 23836

Query: 185   AGLIPIVIPNQLDGDMIRTDLVAIEDKIKELGVDN-----ILCVFSTTSCFAPRVPDKII 239
             A L P V+     GD + +D+    +K+ +L  +N     +LCVFSTTSCFAPR+PD I 
Sbjct: 23835 ANLEPYVLELV*IGDKLCSDV----EKLGKLLENNDFKK*VLCVFSTTSCFAPRIPDNIT 23668

Query: 240   EISEICKRYNIGHIINNAYGLQCSKILHNISQA-CKLGRVDAFIQSTDKNFMVPVGGAII 298
             EI  IC   NI HI+NNAYGL C+KI++ I++   K  R+DA I STDKNF+VPVGGAII
Sbjct: 23667 EIGRICFVNNIPHIVNNAYGL*CAKIVNLINETYSKNHRIDAIISSTDKNFLVPVGGAII 23488

Query: 299   SGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKF 358
              G N   I +I+ NYPGRA+ SPI+D+FIT LS G++ W  LL  RKE LIY  E+L+  
Sbjct: 23487 YGENK*LIKEINENYPGRASLSPIIDLFITFLSTGREKWE*LLNIRKENLIYLKEKLN*V 23308

Query: 359   ALENNEKLL-NTINENKISFAXXXXXXXXXXXXXXXXXXXXXXXXXXXMIGSKLFSRSCS 417
              L+  E++L +T N   + F                             +G  L+++   
Sbjct: 23307 LLKYEERVL*STENSISVGFTLKNI*KN*KN*ISILE------------LGGILYNKRIM 23164

Query: 418   GSRVIDLKSNKKLLIGGLEFNNYGSHIDNYS-TSYLTVACAIGITKLEIDTFIQRL 472
             G R+I + + K L I  L F NYG   D Y+   Y+TVACAIG+ K EID F+ +L
Sbjct: 23163 GGRII-INNEKVLKIDNL*FKNYGCSNDFYTELPYMTVACAIGMEKKEIDMFLIKL 22999


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,060,486
Number of Sequences: 2017
Number of extensions: 378783
Number of successful extensions: 1324
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 269
length of query: 479
length of database: 16,266,656
effective HSP length: 107
effective length of query: 372
effective length of database: 16,050,837
effective search space: 5970911364
effective search space used: 5970911364
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)