TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241484|gb|AFNH01002423.1| Gregarina niphandrodes asmbl.316...    33   0.28 
gi|338241448|gb|AFNH01002441.1| Gregarina niphandrodes asmbl.318...    30   1.8  
gi|338240612|gb|AFNH01002860.1| Gregarina niphandrodes asmbl.357...    28   5.3  
gi|338240881|gb|AFNH01002726.1| Gregarina niphandrodes asmbl.344...    28   7.0  
gi|338243422|gb|AFNH01001454.1| Gregarina niphandrodes asmbl.227...    28   7.0  
gi|338241708|gb|AFNH01002311.1| Gregarina niphandrodes asmbl.305...    28   9.1  

>gi|338241484|gb|AFNH01002423.1| Gregarina niphandrodes asmbl.3165,
            whole genome shotgun sequence
          Length = 13525

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 209  EDKIKELGVDNILCVFSTTSCFAPRVPDKI-IEISEICKRYNIGHIINNA 257
            +D+++ELG+  +LC F  T+   P  PD+I   ISE      +  ++NNA
Sbjct: 9113 QDRLEELGLKALLCTFDITN---PSAPDQIWNRISEALPGRKVDCLVNNA 8973


>gi|338241448|gb|AFNH01002441.1| Gregarina niphandrodes asmbl.3181,
            whole genome shotgun sequence
          Length = 6303

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 333  GKQGWLNLLKERKELLIYFNEQLSKFALENNEKLL 367
            G++GWL LL+ R + L+Y N  L   +L   ++LL
Sbjct: 4335 GRRGWLRLLQLRIQRLLYGNPLLISSSLNRQKQLL 4439


>gi|338240612|gb|AFNH01002860.1| Gregarina niphandrodes asmbl.3571,
            whole genome shotgun sequence
          Length = 27560

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 82   GLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGL 131
            G V+ RH  FAH    + D TE +P+      I +   S+  DA+K  G+
Sbjct: 6425 GSVQSRHSEFAHDRTSTTDATEWEPR-----FIIRYPDSMASDALKREGV 6291


>gi|338240881|gb|AFNH01002726.1| Gregarina niphandrodes asmbl.3446,
            whole genome shotgun sequence
          Length = 2708

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 67   IENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDIT 102
            + N+G  ER GR ++ ++  RH GF   + R G  +
Sbjct: 1200 VRNVGSLERLGRQHTCMIMDRHVGFLGSVRRVGSFS 1093


>gi|338243422|gb|AFNH01001454.1| Gregarina niphandrodes asmbl.2275,
            whole genome shotgun sequence
          Length = 4988

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 67   IENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDIT 102
            + N+G  ER GR ++ ++  RH GF   + R G  +
Sbjct: 4041 VRNVGSLERLGRQHTCMIMDRHVGFLGSVRRVGSFS 3934


>gi|338241708|gb|AFNH01002311.1| Gregarina niphandrodes asmbl.3058,
            whole genome shotgun sequence
          Length = 31647

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 76   EGRIYSGLVEKRHYGFAHGIGRSGDI 101
            E   Y GL ++RH+G AHG  R G +
Sbjct: 6122 EAAHYRGLDQQRHHGHAHG*LRDGPV 6199


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,911,141
Number of Sequences: 3680
Number of extensions: 90972
Number of successful extensions: 355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 239
length of query: 479
length of database: 5,120,956
effective HSP length: 98
effective length of query: 381
effective length of database: 4,760,316
effective search space: 1813680396
effective search space used: 1813680396
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)