TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium transferase [Dictyostelium discoideum AX4] (479 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 480 e-142 gi|328866208|gb|GL883028.1| Dictyostelium fasciculatum unplaced ... 31 1.8 gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced ... 30 3.0 gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 30 5.1 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 29 8.7 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 480 bits (1235), Expect(2) = e-142 Identities = 258/459 (56%), Positives = 327/459 (71%), Gaps = 22/459 (4%) Frame = +3 Query: 39 KKLPNIGYNDKIIELILNEISLMDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRS 98 ++LP+ G++D+ I LN+I+ MDSNN++EN GVGEREGRI+S +V++RH+G AHGIGRS Sbjct: 3466929 RRLPDKGWDDQFIRWFLNDIAKMDSNNYVENAGVGEREGRIHSRIVQERHFGLAHGIGRS 3467108 Query: 99 GDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCXXXXXXXXXXXXXXXXXX- 157 GDI+EQQPKAAGSSL+Q+L LV+D+M +AGL +S+ C Sbjct: 3467109 GDISEQQPKAAGSSLVQRLCSYLVMDSMSVAGL--NSIGECLVLPMATGMTIALTLMTFT 3467282 Query: 158 KSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIRTDLVAIEDKIKELGV 217 K +YV+WPRIDQKSCLK+I TAGL+P+VI N L GD+I TDL AIE+KI ELG Sbjct: 3467283 KHCRPPTAKYVIWPRIDQKSCLKAIATAGLVPVVIENVLQGDVITTDLEAIENKIIELGP 3467462 Query: 218 DNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKILHNISQAC---K 274 +N++CV+STTSCFAPRVPD+IIEISE+C +YN+GHIINNAYGLQCSKI+H I+++C K Sbjct: 3467463 ENVVCVYSTTSCFAPRVPDRIIEISELCYKYNVGHIINNAYGLQCSKIVHAINESCQSDK 3467642 Query: 275 LGRVDAFIQSTDKNFMVPVGGAIISGPNSE-----------------FIDQISRNYPGRA 317 RVDA IQSTDKN+MVPVGGAII+ P E ID IS+NYPGRA Sbjct: 3467643 QRRVDAIIQSTDKNYMVPVGGAIITSPKKEKQQHKQKEKGEEEQQVNLIDLISKNYPGRA 3467822 Query: 318 NSSPILDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALE-NNEKLLNTINENKIS 376 N SPILD+FITLLSMG+QG+ LL ERK+LL YF +QL+ +L+ N +LL+T +N+IS Sbjct: 3467823 NGSPILDLFITLLSMGRQGYKELLDERKQLLTYFRDQLASLSLQFPNCRLLDT-PDNRIS 3467999 Query: 377 FAXXXXXXXXXXXXXXXXXXXXXXXXXXXMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLE 436 MIGSKLFSRSCSG+RVI+L +KK + GL+ Sbjct: 3468000 LG-----------LALAVASGDQQKLSISMIGSKLFSRSCSGARVIELPGSKK-SVAGLD 3468143 Query: 437 FNNYGSHIDNYSTSYLTVACAIGITKLEIDTFIQRLSKL 475 F +YGSHI+NY +SYLTVACAIGITK +IDTF++RL K+ Sbjct: 3468144 FESYGSHINNYHSSYLTVACAIGITKDDIDTFMKRLKKI 3468260 Score = 43.5 bits (101), Expect(2) = e-142 Identities = 20/36 (55%), Positives = 25/36 (69%) Frame = +2 Query: 1 MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLL 36 MN KNLE CK LI SYI+Q+ Q +Q+N L+ LL Sbjct: 3466718 MNQKNLEICKSLINPSYIEQSSQAINQYNHLINVLL 3466825 >gi|328866208|gb|GL883028.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02G6ADK-5, whole genome shotgun sequence Length = 378254 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = +3 Query: 41 LPNIGYNDKIIELILNEISLMDSNNFIENIGVGERE 76 L I ++K+I +IL SLM S NF E I VGER+ Sbjct: 214611 LCKIKNSNKLITIILMISSLMSSKNFHEIINVGERK 214718 >gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-143d02.r1-5, whole genome shotgun sequence Length = 656888 Score = 30.4 bits (67), Expect = 3.0 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = -2 Query: 322 ILDVFITLLSMGKQGWLNLLKERKELLIYFNEQLSKFALENNE-----KLLNTINENK 374 I+D+FI L + KQ W NLL +E ++ N L +F L N KL+ T+ +N+ Sbjct: 499258 IVDLFI-LQRLDKQSWSNLL---EEAIVCENVDLVRFILFNTNASMTPKLIQTLTQNQ 499097 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 29.6 bits (65), Expect = 5.1 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +3 Query: 8 TCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISLMDSNNFI 67 TC + S ID A G F + + ++ +L + Y D++I ++ +++SL + +F+ Sbjct: 1252209 TCGQFVGYSNIDLASGGYPNFLSIKDVDPVNLELSQMRYTDRVITVLGDDLSLATATDFL 1252388 Score = 29.3 bits (64), Expect = 6.7 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 49 KIIELILNEISLMDSNNFIENIGVGEREGRI 79 K+I +ILN+IS +SNNF+ G + G++ Sbjct: 288537 KLIIIILNQISSSNSNNFLSRKGNPNKLGKV 288445 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/100 (23%), Positives = 44/100 (44%) Frame = +3 Query: 4 KNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISLMDS 63 +NLE C GL +++ IQ ++ LL+ L H + Y + I+L Sbjct: 2142066 RNLEKCNGLDLSAFLIMPIQRLPRYVMLLQDLFKHTDSKHTDYEN-------ISIALKKM 2142224 Query: 64 NNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDITE 103 + E + +RE + +++ +H IG+ G++ E Sbjct: 2142225 KDVAEYVNEKKREAENLNQVLQIQH----SLIGKFGNLAE 2142332 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.319 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,108,491 Number of Sequences: 25 Number of extensions: 216327 Number of successful extensions: 937 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 853 Number of HSP's gapped (non-prelim): 120 length of query: 479 length of database: 10,339,736 effective HSP length: 104 effective length of query: 375 effective length of database: 10,337,136 effective search space: 3876426000 effective search space used: 3876426000 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)