TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848154|gb|ADNL01002449.1| Astrammina rara contig02914, who...    27   1.1  
gi|330850330|gb|ADNL01000273.1| Astrammina rara contig00284, who...    25   2.4  
gi|330850160|gb|ADNL01000443.1| Astrammina rara contig00488, who...    25   3.1  
gi|330849622|gb|ADNL01000981.1| Astrammina rara contig01143, who...    25   4.0  
gi|330850591|gb|ADNL01000012.1| Astrammina rara contig00013, who...    24   5.2  
gi|330849708|gb|ADNL01000895.1| Astrammina rara contig01040, who...    24   6.8  
gi|330850300|gb|ADNL01000303.1| Astrammina rara contig00314, who...    24   6.8  
gi|330847439|gb|ADNL01003164.1| Astrammina rara contig02816, who...    23   8.9  

>gi|330848154|gb|ADNL01002449.1| Astrammina rara contig02914, whole
             genome shotgun sequence
          Length = 13323

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 219   NILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIIN 255
             N LC+F+T S   PRV      I  +  R NIG I +
Sbjct: 12234 NRLCLFATKSVHNPRVFASGFFILSLINRVNIGAIFS 12344


>gi|330850330|gb|ADNL01000273.1| Astrammina rara contig00284, whole
           genome shotgun sequence
          Length = 605

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 227 TSCFAPRVPDKIIEISEICKRYNIGHI 253
           TSC   RV     E+ E+C+ Y   H+
Sbjct: 453 TSCMRGRVTVGRFEVEELCREYGSFHV 373


>gi|330850160|gb|ADNL01000443.1| Astrammina rara contig00488, whole
           genome shotgun sequence
          Length = 753

 Score = 25.0 bits (53), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 407 IGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHID 445
           + S  FS S     + DL  N+   IGG+   N  +H+D
Sbjct: 705 VKSDTFSPSDLAMAIEDLMKNETFEIGGIGLYNTFTHVD 589


>gi|330849622|gb|ADNL01000981.1| Astrammina rara contig01143, whole
           genome shotgun sequence
          Length = 240

 Score = 24.6 bits (52), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 169 LWPRIDQKSCLKSII 183
           LWP I+  SCLKS +
Sbjct: 180 LWPTIEALSCLKSAV 224


>gi|330850591|gb|ADNL01000012.1| Astrammina rara contig00013, whole
            genome shotgun sequence
          Length = 4866

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 424  LKSNKKLLIGGLEFNNYGSHIDNYS 448
            LKSNK L    L FNN+ +H  NY+
Sbjct: 3072 LKSNKNLTKSTLYFNNH-NHRHNYN 3143


>gi|330849708|gb|ADNL01000895.1| Astrammina rara contig01040, whole
           genome shotgun sequence
          Length = 242

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 246 KRYNIGHIINNAYGLQCSKILHNISQA 272
           ++YNI +IINN + L    IL   + +
Sbjct: 216 RKYNIFYIINNRFTLSIYSILFKFTNS 136


>gi|330850300|gb|ADNL01000303.1| Astrammina rara contig00314, whole
            genome shotgun sequence
          Length = 1296

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 190  IVIPNQLDGDMIRTDLVAIEDKIKELGVDNILC 222
            ++I   + GD++   + AI  K K+L +D +LC
Sbjct: 1247 LIIIAGIGGDLMIEFIEAIYKKHKDLNIDFLLC 1149


>gi|330847439|gb|ADNL01003164.1| Astrammina rara contig02816, whole
           genome shotgun sequence
          Length = 531

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 356 SKFALENNEKLLNTINEN 373
           S+   ENN  +LNTI+E+
Sbjct: 491 SRATFENNSSILNTIHES 438


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 672,747
Number of Sequences: 3231
Number of extensions: 8080
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of query: 479
length of database: 483,365
effective HSP length: 77
effective length of query: 402
effective length of database: 234,578
effective search space: 94300356
effective search space used: 94300356
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)