TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325182412|emb|FR824072.1| Albugo laibachii Nc14, genomic cont...    30   4.0  

>gi|325182412|emb|FR824072.1| Albugo laibachii Nc14, genomic contig
             CONTIG_27_NC14_v4_154116_231
          Length = 154116

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 246   KRYNIGHIINNAYGLQCSKILHNISQACKLGRVDAFIQSTDKNFMVP 292
             K  N  H ++      C  I HN      L  ++AFIQ  + +FMVP
Sbjct: 16702 KWLNTNHRLSRCIHHLCGHIGHNKIHLNNLRHIEAFIQQNNCSFMVP 16842


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,089,880
Number of Sequences: 3816
Number of extensions: 200040
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 354
length of query: 479
length of database: 10,913,379
effective HSP length: 104
effective length of query: 375
effective length of database: 10,516,515
effective search space: 3943693125
effective search space used: 3943693125
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)