TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                      126   3e-29
TcIL3000_10_v2.embl                                                    29   5.4  

>T.congo.pschr.11
          Length = 4797796

 Score =  126 bits (316), Expect = 3e-29
 Identities = 86/253 (33%), Positives = 124/253 (49%), Gaps = 51/253 (20%)
 Frame = -3

Query: 76      PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135
               P+EG ++  ++L L  ++  DTNN      VGAGEREGRV + LVQR + NLTHG+GRSG
Sbjct: 3680285 PDEGLNDCAIELLLHQIAMMDTNNFT--AHVGAGEREGRVASTLVQRRYYNLTHGVGRSG 3680112

Query: 136     NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRRRR 195
               ++   QPKA GSS+L  L+N              + S  V+P+ TGM++SL + S    R
Sbjct: 3680111 DICSDQPKAAGSSLLYKLTNHMVLDLLRQAGTPSLASAAVIPMATGMTISLVLRSIAHHR 3679932

Query: 196     PK----------------------------AKYVIWLRIDQKSSLKSIYHAGFEPIIV-- 225
                +                             ++VIW R+DQK++LK I  +GF P++V  
Sbjct: 3679931 DQETRTRATEAAVDDQRRSDCGATSVAPVAPRFVIWTRVDQKTALKCIELSGFIPVVVPL 3679752

Query: 226     ------EPIRDHDA-------------LITNVESVNRIVEQRG--EEILCVMTTTSCFAP 264
                        RD D              L  +V+ V   +E+ G    +LCV++TTSCFAP
Sbjct: 3679751 RRASVLRRYRDEDKDGPGAVSSLHSYFLQAHVDDVAASIERVGGPTNVLCVLSTTSCFAP 3679572

Query: 265     RSPDNIEAISAIC 277
                +     A +  C
Sbjct: 3679571 STEQINNAENRCC 3679533



 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 80/276 (28%), Positives = 123/276 (44%), Gaps = 40/276 (14%)
 Frame = -1

Query: 252     ILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVD 311
               I C +T+     P S      +  +C    V       + +QS   +++I AA   GRVD
Sbjct: 3679675 IFCRLTSMMSRRPLSVLEDPQMCCVCCLQLVV-----LHRVQSRSIMQRIDAAIRLGRVD 3679511

Query: 312     AVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLE 371
               A+VQS DKNF VPVGGA+++   ++ +      Y GRAS+ P  DL +T L  G+SGF  
Sbjct: 3679510 AIVQSGDKNFLVPVGGAVLSG-GRTEVARATSLYAGRASASPVVDLFITALSLGRSGFQR 3679334

Query: 372     PFNKQKQMFLKMRRKLNSFAENIGECVYD------------------------------- 400
                ++ +  +   + ++L  FA    E + D                               
Sbjct: 3679333 LWDARYFLRELLEQRLRDFARAREETLLDEFDPQGDMHGVHDDGSCNRHNSSGLSAATDT 3679154

Query: 401     -------VPENEISLAMTLSTI-PPTKQSLFGSVLFARGITGARVVPSNQSKTTIEGCEF 452
                         N+IS A+T+  I  P++ +  G+ LF   +TG RVV  N+ K ++ G  F
Sbjct: 3679153 RRGDAKYALRNDISFAITMRNIGGPSEAAAVGARLFRGAVTGPRVVLPNEEKISLCGHLF 3678974

Query: 453     INFGSHTAEQHG-GYLNVACSIGMTEHELEEFFTRL 487
                N+G HT +      L +AC +GM   + E    RL
Sbjct: 3678973 RNYGMHTDDTPACPLLVLACGVGMKIEDAEGLMKRL 3678866


>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 15      ECACLPLCVDCQSRVDECVSGRTARSEDMKASFGKKEGE 53
               E A  P C  C+ RVDE VSG      D+   +GK +GE
Sbjct: 1410996 EIAAAPECPVCRGRVDERVSG------DIIPLYGKGKGE 1410898



 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 323     VPVGGALIAAFKQSHIQAIAQAYPGRASSI 352
               +P GG  + A K SH++   QA+P RA  +
Sbjct: 1237308 LPYGGLRVRAGKLSHVRGTPQAHPQRACRV 1237397


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,948,356
Number of Sequences: 11
Number of extensions: 216888
Number of successful extensions: 1144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 479
length of query: 523
length of database: 7,429,315
effective HSP length: 102
effective length of query: 421
effective length of database: 7,428,193
effective search space: 3127269253
effective search space used: 3127269253
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)