TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.837 of Sphaeroforma arctica JP610                           93   2e-18
supercont1.189 of Sphaeroforma arctica JP610                           34   1.1  

>supercont1.837 of Sphaeroforma arctica JP610
          Length = 39100

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 46/108 (42%), Positives = 68/108 (62%)
 Frame = -1

Query: 123   LHSNLTHGIGRSGNLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGM 182
             LHS + HGIGRSG++   QPKA GSS+++ L+  F             KSC V PL TGM
Sbjct: 22591 LHS-MGHGIGRSGDISAHQPKAAGSSLMSKLTQYFMLEILKLSGATRTKSCYVFPLATGM 22415

Query: 183   SLSLCMTSWRRRRPKAKYVIWLRIDQKSSLKSIYHAGFEPIIVEPIRD 230
             ++ +C+ + + + P A +V+W RIDQK+ LK+I   GF P+++E I +
Sbjct: 22414 AVVMCLLALKAKNPTATHVVWPRIDQKTCLKAIVATGFIPVVIENITE 22271



 Score = 87.4 bits (215), Expect = 8e-17
 Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
 Frame = -3

Query: 304   AHECGRVDAVVQSLDKNFQVPVGGALIAA-FKQSHIQAIAQAYPGRASSIPSRDLVLTLL 362
             A   GRVDA VQS DKNF VPVGG++IA   K   +  + + YPGRAS  P+ D+ +TLL
Sbjct: 21305 AMRLGRVDAYVQSTDKNFLVPVGGSVIAGPDKHLKVADVCKTYPGRASGTPTLDVFITLL 21126

Query: 363   YQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGECVYDVPENEISLAMTLS 413
               G +G+     ++K+++  +++K++  A   GE +   P N ISLA+T++
Sbjct: 21125 SMGSNGYKHRLLQRKEIYEILKQKMSEVAAKHGERLLHTPHNPISLAITIT 20973



 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 27/65 (41%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
 Frame = -3

Query: 232   DALITNVESVNRIVEQRG--EEILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNNA 289
             D L T++ ++   +++ G  E++LCV++TTSCFAPR+ D +  I+ +C    + H+VNNA
Sbjct: 21743 DELRTDLPAIEDAIKRAGGPEKVLCVLSTTSCFAPRAFDKVSEIAVMCERLGIAHVVNNA 21564

Query: 290   YGLQS 294
             YG+ S
Sbjct: 21563 YGVTS 21549



 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 25/77 (32%), Positives = 44/77 (57%)
 Frame = -3

Query: 418   TKQSLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHGGYLNVACSIGMTE 477
             T  +  G++LF RG++GARVV ++  K  + G  F  +G+H       YL VA ++GMT 
Sbjct: 20531 TDVTRLGAMLFRRGVSGARVVSADDVKV-VAGVSFKGYGAHADAYFTPYLTVAAALGMTR 20355

Query: 478   HELEEFFTRLASSYAKF 494
              ++E+   R+  +  ++
Sbjct: 20354 KDVEQVVERIDKTLTEY 20304



 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 24/60 (40%), Positives = 36/60 (60%)
 Frame = -1

Query: 74    QIPEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGR 133
             ++P  GW + T+ LFL  LS  D+NN  +    GAGEREGR+ + LV+ +H+     + R
Sbjct: 23359 RLPVGGWDDATIKLFLQDLSLMDSNNFNEY--SGAGEREGRIESSLVRDMHNGYVSAV*R 23186


>supercont1.189 of Sphaeroforma arctica JP610
          Length = 119173

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +2

Query: 422  LFGSVLFARGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHGGYLNVACSIGMTEHELE 481
            +F   +   G+  +R+  ++Q K +   C+     +  AE+    +   CS+G  EHE+E
Sbjct: 3287 IFVPFIMLTGLVLSRIASASQGKASQVYCQ----AAACAEEALCLIKTVCSLGGQEHEVE 3454

Query: 482  EFFTRLASSYAKFVRQ 497
            +++T++     K + Q
Sbjct: 3455 QYYTQVKDVEQKTILQ 3502


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,966,290
Number of Sequences: 15618
Number of extensions: 1272641
Number of successful extensions: 7088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 4796
Number of HSP's gapped (non-prelim): 3693
length of query: 523
length of database: 40,529,447
effective HSP length: 114
effective length of query: 409
effective length of database: 38,748,995
effective search space: 15848338955
effective search space used: 15848338955
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)