TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig19987  1321 1331                                                 91   2e-17
Contig8169  4144 7930                                                  68   1e-10
Contig98548  227 227                                                   47   3e-04
Contig278651  618 618                                                  33   4.5  
Contig133749  655 655                                                  33   4.5  
Contig115575  974 974                                                  33   4.5  
Contig95392  249 249                                                   33   4.5  

>Contig19987  1321 1331
          Length = 1331

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 45/92 (48%), Positives = 62/92 (67%)
 Frame = -3

Query: 286  VNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAY 345
            VNNAYGLQ     + I  A + GR+DA++QS DKNF VPVGGA+IA   +  + AIA+ Y
Sbjct: 1278 VNNAYGLQDHAVCQGITQAAKKGRIDAIIQSTDKNFMVPVGGAIIAGPDEKFMNAIAKNY 1099

Query: 346  PGRASSIPSRDLVLTLLYQGQSGFLEPFNKQK 377
            PGRAS  P  DL +TL+  G+ G+ +  +++K
Sbjct: 1098 PGRASGSPVLDLFITLISLGRDGYEKLLHERK 1003


>Contig8169  4144 7930
          Length = 7930

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 47/212 (22%)
 Frame = -3

Query: 74   QIPEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGR 133
            ++PE GW E T++  L  ++  D+NN +    VG GEREGRV + +V + H   T+ +  
Sbjct: 3455 RLPESGWDEGTIEYILHTIAGMDSNNFIKN--VGVGEREGRVASGIVAKRHYR*TNYLFL 3282

Query: 134  S-----------------GNLLEIQP----------KALGSSMLAC-----LSNEFXXXX 161
            +                  N    Q           + L     AC      S+ F    
Sbjct: 3281 NRH*HSN*VRSWCWKEWGNNRTSAQSCWSFPNF*IDQLLSY*CHACCWYLFFSSLFILKF 3102

Query: 162  XXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRRRRP--------------KAKYVI-WLRI 206
                    + + IVVPL TGM+L+L + + +++                K +YV+ W RI
Sbjct: 3101 R*FNLGLRIPAAIVVPLATGMALTLTLLTLKQQHDEKQLSDAQIAINDIKNQYVVFWPRI 2922

Query: 207  DQKSSLKSIYHAGFEPIIVEPIRDHDALITNV 238
            DQKS LKSI+ AGF PI +    D D L T +
Sbjct: 2921 DQKSCLKSIHTAGFRPIPIPVKLDGDELRTGM 2826


>Contig98548  227 227
          Length = 227

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 239 ESVNRIVEQRGEEILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNN 288
           E+V +   +     + VMTTTSCFAPR+PD ++ ++ +C  + V H+ N+
Sbjct: 49  EAVRKHTTEFPHACVVVMTTTSCFAPRAPDRVDDVATLCQKYGVAHVGNS 198


>Contig278651  618 618
          Length = 618

 Score = 32.7 bits (73), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +3

Query: 112 EGRVLT-----PLVQRLHSNLTHGIGRSGNLLEIQPKALGSSMLACLS 154
           EGRV T     PL+++  +    G+G  G +LEI     GSS ++C++
Sbjct: 444 EGRVKTKFLTSPLIEKCQARGGRGLGEKGEVLEIVTGEWGSSQMSCVT 587


>Contig133749  655 655
          Length = 655

 Score = 32.7 bits (73), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +3

Query: 112 EGRVLT-----PLVQRLHSNLTHGIGRSGNLLEIQPKALGSSMLACLS 154
           EGRV T     PL+++  +    G+G  G +LEI     GSS ++C++
Sbjct: 108 EGRVKTKFLTSPLIEKCQARGGRGLGEKGEVLEIVTGEWGSSQMSCVT 251


>Contig115575  974 974
          Length = 974

 Score = 32.7 bits (73), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +3

Query: 112 EGRVLT-----PLVQRLHSNLTHGIGRSGNLLEIQPKALGSSMLACLS 154
           EGRV T     PL+++  +    G+G  G +LEI     GSS ++C++
Sbjct: 543 EGRVKTKFLTSPLIEKCQARGGRGLGEKGEVLEIVTGEWGSSQMSCVT 686


>Contig95392  249 249
          Length = 249

 Score = 32.7 bits (73), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +2

Query: 112 EGRVLT-----PLVQRLHSNLTHGIGRSGNLLEIQPKALGSSMLACLS 154
           EGRV T     PL+++  +    G+G  G +LEI     GSS ++C++
Sbjct: 11  EGRVKTKFLTSPLIEKCQARGGRGLGEKGEVLEIVTGEWGSSQMSCVT 154


  Database: P.polycephalum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,991,440
Number of Sequences: 297657
Number of extensions: 2666091
Number of successful extensions: 12937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12919
length of query: 523
length of database: 106,339,350
effective HSP length: 118
effective length of query: 405
effective length of database: 71,215,824
effective search space: 28842408720
effective search space used: 28842408720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)