TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_58                                                      161   1e-73
PHYCAscaffold_24                                                       30   8.9  

>PHYCAscaffold_58
          Length = 327658

 Score =  161 bits (408), Expect(2) = 1e-73
 Identities = 86/217 (39%), Positives = 133/217 (61%), Gaps = 8/217 (3%)
 Frame = -3

Query: 74     QIPEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGR 133
              ++P+EGW + ++++ L  LS+ D+NN       GAGERE RV +P+V R H  L HG+GR
Sbjct: 326741 RLPDEGWDDASVEMLLQTLSAMDSNNFQGS--AGAGEREARVFSPMVARRHFRLAHGVGR 326568

Query: 134    SGNLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRR 193
              SG++  +QPKA GSS+L  L+N              V++ +V+P+ TGMSL+L +     
Sbjct: 326567 SGDVAAVQPKAAGSSLLVQLANSLAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLNE 326388

Query: 194    RRPKAKYVIWLRIDQKSSLKSIYHAGFEPIIVEP--IRDHDA-----LITNVESVNRIVE 246
               +P A YVIW RIDQKS  KSI  AG  P+++    + + D      L T++  +  +++
Sbjct: 326387 LKPGAHYVIWPRIDQKSCFKSILAAGLTPLVLPNVLVEEEDGRLGGYLKTDLAGMAELID 326208

Query: 247    QRG-EEILCVMTTTSCFAPRSPDNIEAISAICAAHDV 282
              Q G + IL VM+TTSCFAPR+ D+++ I+ +C   ++
Sbjct: 326207 QYGADSILAVMSTTSCFAPRAYDSVQEIAKMCQDRNI 326097



 Score =  135 bits (340), Expect(2) = 1e-73
 Identities = 92/297 (30%), Positives = 143/297 (48%), Gaps = 80/297 (26%)
 Frame = -1

Query: 284    HLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQ 343
              H++NNAYG+Q+ + + ++  A   GRVDAVVQSLDKNF VPVGGA++ +  +  +  +A+
Sbjct: 326020 HVINNAYGVQASKCVHEVELAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAK 325841

Query: 344    AYPGRASSIPSRDLVLTLL----------------------YQGQSGFLEPFNKQKQMFL 381
               YPGRAS+ P+ D  +T+L                      YQG+SG+ +  +++K + +
Sbjct: 325840 FYPGRASATPTLDFFITMLQMVSSPEIHVI*LLSSSSQLVCYQGKSGYRQLLDERKHLAV 325661

Query: 382    KMRRKLNSFAENIGECVYDVPENE-----------------------ISLAMTLSTI--- 415
               MR KL S A   GE V  V  NE                       IS A+TL T+   
Sbjct: 325660 YMREKLESLAAEEGERVLRVSSNEVLVGCVLEWLGISAFLTLKCCAQISFALTLGTLCSD 325481

Query: 416    ------PPTKQSLFGSVLFARGITGARVV---------------PSN-----------QS 443
                       + +  GS+LF+RG++GAR V               PS+             
Sbjct: 325480 VMDKKEKSQQLTFLGSMLFSRGVSGAR*VYTCSDLIGWFACCY*PSDF*DHCYRVVSCLD 325301

Query: 444    KTTIEGCEFINFGSHTAEQHGGYLNVACSIGMTEHELEEFFTRLASSYAKFVRQMAK 500
              + TI G +F +FG+H  E    Y+  AC++GM   E++   T+L  +  ++  + +K
Sbjct: 325300 RKTIAGHDFDSFGAHYDEFPVAYVTFACALGMRRDEVDLLITKLRKTIQEWRTKQSK 325130


>PHYCAscaffold_24
          Length = 787421

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 90     SWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSGNLLEIQPKALG 146
              +WL +H        IP     R  R LTP + R H ++  G G+   L E  P+A G
Sbjct: 164534 AWLHAHSVGQV*RQIPPRGSYRSTRNLTPSLHRAHRSV-RGEGQGCRL*EQHPEASG 164367


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,738,363
Number of Sequences: 917
Number of extensions: 609719
Number of successful extensions: 3446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2792
Number of HSP's gapped (non-prelim): 1815
length of query: 523
length of database: 21,341,249
effective HSP length: 110
effective length of query: 413
effective length of database: 21,240,379
effective search space: 8772276527
effective search space used: 8772276527
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)