TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6577  |  | 1 to 12105                                        227   1e-59
Lt_contig5254  |  | 1 to 4927                                          32   1.4  
Lt_contig7142  |  | 1 to 14097                                         31   1.9  
Lt_contig7004  |  | 1 to 20035                                         31   2.4  
Lt_contig3527  |  | 1 to 3307                                          31   2.4  
Lt_contig4140  |  | 1 to 5910                                          30   4.1  
Lt_contig3116  |  | 1 to 3280                                          30   4.1  
Lt_contig184  |  | 1 to 21269                                          30   4.1  
Lt_contig2352  |  | 1 to 669                                           30   5.4  
Lt_contig2044  |  | 1 to 921                                           29   7.1  
Lt_contig3938  |  | 1 to 2673                                          29   7.1  
Lt_contig1094  |  | 1 to 17314                                         29   9.2  

>Lt_contig6577  |  | 1 to 12105
          Length = 12105

 Score =  227 bits (579), Expect = 1e-59
 Identities = 173/545 (31%), Positives = 251/545 (46%), Gaps = 133/545 (24%)
 Frame = -3

Query: 76   PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135
            P+E  ++  ++L L  LS  DTNN      VG GEREGRV++ LV+  H +LTHGIGRSG
Sbjct: 6568 PDEALTDAAIELILRQLSLMDTNNFAHH--VGGGEREGRVVSALVRMRHFHLTHGIGRSG 6395

Query: 136  NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRRRR 195
            +L   QPKA GSS+L  ++N                + +VVP+ TGM+L+L +    + R
Sbjct: 6394 DLFSEQPKAAGSSLLYKITNVLMLDLLRQAGAPSTAAAVVVPMSTGMTLALVLRCVAKSR 6215

Query: 196  PKA---------------------------------------------------KYVIWL 204
             +                                                    +YVIW 
Sbjct: 6214 TEELMKEAEAVQPQLTVTKDSTSAASAAQVQEPSTSEADRAGHDRTSLLVPATPRYVIWP 6035

Query: 205  RIDQKSSLKSIYHAGFEPIIVE--------------PIRDHDAL----------ITNVES 240
            RIDQK++LK I  AG  P+ V+                 + D+L          +T   S
Sbjct: 6034 RIDQKTALKCIDAAGLIPVPVQLRPAVTLARSADPWVSANRDSLGRDKGSTGSPVTPTSS 5855

Query: 241  VNRIVEQRGEEI-------------LCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVN 287
             +  +E R +++             +CV++TTSCFAPR PDN   I+  C    +P++VN
Sbjct: 5854 SSLFLECRVDDVAAAVNAVGGPSQVVCVLSTTSCFAPRLPDNTVGIAQYCKEAGIPYVVN 5675

Query: 288  NAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPG 347
            NAYG+QS   + ++ AA   GRVD VVQS DKNF VPVGG++I++  ++  QA+A  Y G
Sbjct: 5674 NAYGVQSRRIMTRLDAAQRLGRVDFVVQSGDKNFLVPVGGSIISSSDKARCQAVAALYAG 5495

Query: 348  RASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGECVY-------- 399
            RAS  P  DL +T L  G+ G    ++ + +   ++ R+L  FA    E +         
Sbjct: 5494 RASMSPIVDLFITALSLGRRGMQALWSDRYRCRARLIRQLREFARERREVLLVDDTDDKA 5315

Query: 400  -------DVP-----ENEISLAMTLST--IPPTKQS---------------------LFG 424
                    +P      N+IS+A+T+ T  +P  K                        FG
Sbjct: 5314 DTVSGSKTIPGTVTARNDISVAVTMRTYGLPTAKVGSSGVQRESAQVEKVANWAAARAFG 5135

Query: 425  SVLFARGITGARVV-PSNQSKTTIEGCEFINFGSHTA-EQHGGYLNVACSIGMTEHELEE 482
            + LF   +TG RV+ P+  + TTI GC F N+G H         L +AC IGM+E E++ 
Sbjct: 5134 AQLFRSAVTGPRVITPAPSTPTTIAGCTFRNYGMHQDWAPPCPLLVIACGIGMSEAEVDA 4955

Query: 483  FFTRL 487
               RL
Sbjct: 4954 LMARL 4940


>Lt_contig5254  |  | 1 to 4927
          Length = 4927

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 383  MRRKLNSFAEN-----IGECVYDVPENEISLAMTLSTIPPTKQSLFGSVLFARGI 432
            M R +  FAEN     +G C    P++  ++AM +  IPP ++ L  + +   G+
Sbjct: 3437 MARDIRDFAENGWVNLVGGCCGTTPDHIRAIAMAVKDIPPRRRGLPSTTMVISGL 3273


>Lt_contig7142  |  | 1 to 14097
          Length = 14097

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 295   EETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFK 334
             E  +RK+ AAH C R+     +LD+   V   G  +A F+
Sbjct: 11637 ERAVRKVKAAH*CPRIWRAASTLDEEVSVNFTGVRLARFR 11518


>Lt_contig7004  |  | 1 to 20035
          Length = 20035

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 420   QSLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHGGYLNVACSIGM 475
             +S+ G+ +F  GI G  +V    +     GC+F   G   ++ HG +   AC++ M
Sbjct: 18295 KSVIGTAVFGTGIGGGELVRDGVTVAR-RGCQFSGDGVTRSQPHGRFSAEACTLCM 18459


>Lt_contig3527  |  | 1 to 3307
          Length = 3307

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 16  CACLPLCVDCQSRVDECVSGRTARSE 41
           CAC+PL V C+S  D C +GR  RSE
Sbjct: 192 CACVPLRV-CESDDDCCTNGRLQRSE 266


>Lt_contig4140  |  | 1 to 5910
          Length = 5910

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = -1

Query: 173  CIVVPLCTGMSLSLCMTSWRRRRPKAKYVIWLRIDQKSSLKS----IYHAGFEPIIVEPI 228
            C   P+   ++ S  +T+     P+  Y      + + +L      +Y  G  P+IVEP 
Sbjct: 5388 CFAPPVSPPLTTSSQLTNMHAPPPRTHYQYMHSFESRCTLSKRMLRLYGTGTVPVIVEPT 5209

Query: 229  RDHDALITNVESVN 242
              H  L  +  S+N
Sbjct: 5208 ESHLRLSPSPSSLN 5167


>Lt_contig3116  |  | 1 to 3280
          Length = 3280

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 293  QSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSI 352
            Q++   + +A     G  DAVV+    NF+ P  G L     Q   + ++  YPGR S  
Sbjct: 1478 QAQSKEKTLAKMTRGGLTDAVVKDSRINFEFPCAGPLPPPMLQ--FREVSFNYPGRPSLF 1651

Query: 353  PSRDL 357
             + DL
Sbjct: 1652 TNLDL 1666


>Lt_contig184  |  | 1 to 21269
          Length = 21269

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 248  RGEEILCVMTTTSCFAPRSPDNIEAISAICAAH 280
            RGE ++C   T S   P SP  +    A+C AH
Sbjct: 3126 RGETLICRSFTHSLMGPPSPSRMATPHAMCTAH 3224


>Lt_contig2352  |  | 1 to 669
          Length = 669

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 94  SHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSGNLLEIQPKALGSSMLACL 153
           S  +N  + ++ +  G REGR       +LHS+      R G +  I   AL  S+L CL
Sbjct: 526 SPPSNPPLSLMMIDDGSREGRAPARYPHKLHSHCC----RQGRIAHIVDAALVQSILICL 359


>Lt_contig2044  |  | 1 to 921
          Length = 921

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 254 CVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKIA 302
           C+MT  +C A  SP +I            PHL + AYGL +    R ++
Sbjct: 535 CLMTVCACCAQSSPPSI------------PHLADAAYGLMTVRCCRALS 425


>Lt_contig3938  |  | 1 to 2673
          Length = 2673

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 12 GHTECACLPLCVDCQSRVDECVSGRT----ARSEDMKASFGKK 50
          GH+ C C+ +CV    RV E  + R     AR   ++A  G K
Sbjct: 22 GHSRCVCVCVCVCVCGRVGEVANARAKKA*ARQRCLRAKLGVK 150


>Lt_contig1094  |  | 1 to 17314
          Length = 17314

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 414  TIPPTKQSLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHG--GYLNVAC 471
            T PPT+ +   S +F+ G  G +   S  S+  +   ++    SH+   HG  G   ++C
Sbjct: 1249 TRPPTRAAF--SAIFSHGSDGGKTGESKSSEDLLLRAKYYRLCSHSCVDHGLSGGTRLSC 1076

Query: 472  SI 473
            ++
Sbjct: 1075 AV 1070


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,592,230
Number of Sequences: 7267
Number of extensions: 404869
Number of successful extensions: 3074
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 1772
length of query: 523
length of database: 10,532,946
effective HSP length: 104
effective length of query: 419
effective length of database: 9,777,178
effective search space: 4096637582
effective search space used: 4096637582
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)