TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_09                                                             227   1e-59
contig_34                                                              30   3.5  
contig_19                                                              30   4.6  
contig_10                                                              29   7.8  

>contig_09
          Length = 588727

 Score =  227 bits (579), Expect = 1e-59
 Identities = 175/548 (31%), Positives = 252/548 (45%), Gaps = 136/548 (24%)
 Frame = -2

Query: 76     PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135
              P+EG ++  ++L L  LS  DTNN      VG GEREGRV++ LV+  H +LTHGIGRSG
Sbjct: 381876 PDEGLTDAAIELILRQLSLMDTNNLAHH--VGGGEREGRVVSALVRMRHFHLTHGIGRSG 381703

Query: 136    NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCM-----TS 190
              +L   QPKA GSS+L  ++N                + +VVP+ TGM+L+L +     T 
Sbjct: 381702 DLFSEQPKAAGSSLLYKITNVLMLDLIRQAGAPSTAAAVVVPMATGMTLALVLRCVAKTH 381523

Query: 191    WRRRRPKAKYV----------------------------------------------IWL 204
               +    +A+ V                                              IW 
Sbjct: 381522 MKELMKEAEAVQLQRTVTKDSTSATSAAPVQEPPMSEADRDRHDRTSLPVPATPRYVIWP 381343

Query: 205    RIDQKSSLKSIYHAGFEPIIVE-----PIRDHDA--LITNVESVNRIVEQRG-------- 249
              RIDQK++LK I  AG  P+ V+     P+    A  + TN +S++R  +  G        
Sbjct: 381342 RIDQKTALKCIDAAGLVPVPVQLRPAVPLARSAAPCVSTNRDSLDRGQDSIGSPSTPTSS 381163

Query: 250    ----------------------EEILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVN 287
                                     +++CV++TTSCFAPR PDN  AI+  C    +P++VN
Sbjct: 381162 SSLFLECHVDDVAAAVNAVGGPSQVVCVLSTTSCFAPRLPDNTVAIAQYCKKAGIPYVVN 380983

Query: 288    NAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPG 347
              NAYG+QS   + ++ AA   GRVD VVQS DKNF VPVGG++I +  +   +A+A  Y G
Sbjct: 380982 NAYGVQSRRIMTRLDAAQRLGRVDFVVQSGDKNFLVPVGGSIICSGDKERCKAVAALYAG 380803

Query: 348    RASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGECVY-------- 399
              RAS  P  DL +T L  G+ G    ++ + +   ++ R+L  FA    E +         
Sbjct: 380802 RASMSPIVDLFITALSLGRRGMQTLWSDRYKCRARLIRQLRVFARERREVLLVDDSDDDK 380623

Query: 400    ---------------DVPENEISLAMTLST--IPPTKQS--------------------- 421
                              VP N+IS+A+T+    +P  + S                     
Sbjct: 380622 ADEDTVGGSQRTSNAVVPRNDISVAVTMRAYGLPAAEASSSGAQLGSEQAGRVTNWAAAR 380443

Query: 422    LFGSVLFARGITGARVV-PSNQSKTTIEGCEFINFGSH-TAEQHGGYLNVACSIGMTEHE 479
                G+ LF   +TG RV+ P+  + TTI GC F N+G H   E     L +AC IGM+E E
Sbjct: 380442 ALGAQLFRSAVTGPRVITPAPSTPTTIAGCTFRNYGMHQDREPPCPLLVIACGIGMSESE 380263

Query: 480    LEEFFTRL 487
              ++    RL
Sbjct: 380262 VDALMARL 380239


>contig_34
          Length = 1750858

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 170    VKSCIVVPLCTGMSLSLCMTSWRRRRPKAKYVI--WLRIDQ 208
              V  C+ +PLC  M ++  +  W+RRRPK K     W+R ++
Sbjct: 818736 VSVCVSLPLC--MYVAAIVPRWKRRRPKLKRSCRSWVRAER 818620


>contig_19
          Length = 757180

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 293    QSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSI 352
              Q++   + +A     G  DAVV+    NF+ P  G L     Q   + ++  YPGR S  
Sbjct: 348956 QAQSKEKTLAKMTRGGLTDAVVKDSRINFEFPCAGPLPPPMLQ--FREVSFNYPGRPSLF 349129

Query: 353    PSRDL 357
               + DL
Sbjct: 349130 TNLDL 349144


>contig_10
          Length = 558170

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 103    MIPVGAGEREGRVLTPLVQRLHSNLTH 129
              M P G GE++   L P +  LH++LTH
Sbjct: 504401 MSPSGGGEKDSYALLPRLALLHAHLTH 504481


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,391,140
Number of Sequences: 36
Number of extensions: 416597
Number of successful extensions: 3364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 511
length of query: 523
length of database: 10,814,999
effective HSP length: 105
effective length of query: 418
effective length of database: 10,811,219
effective search space: 4519089542
effective search space used: 4519089542
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)