TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplace...   248   1e-65

>gi|340503345|gb|GL984089.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251127, whole genome shotgun
             sequence
          Length = 102005

 Score =  248 bits (633), Expect = 1e-65
 Identities = 158/425 (37%), Positives = 240/425 (56%), Gaps = 12/425 (2%)
 Frame = -3

Query: 85    LDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSGNLLEIQPKA 144
             ++L +S LS  DTNN    I  G GEREGR+++ +VQ+ H  ++HGIGRSGNL   QPKA
Sbjct: 24234 IELLISQLSLMDTNNFSQKI--GVGEREGRIIS*IVQKRHFYMSHGIGRSGNLSAEQPKA 24061

Query: 145   LGSSMLACLSNEFXXXXXXXXXXXXVKS--CIVVPLCTGMSLSLCMTSWRRRRP-KAKYV 201
              GSS++  ++ EF             KS   +++P  TGM+  L + + ++    + KYV
Sbjct: 24060 PGSSLILKIT-EFLVKDMLKLVGLCKKSRNLLILPAATGMACFLTLMALKKNIS*EKKYV 23884

Query: 202   IWLRIDQKSSLKSIYHAGFEPIIVEPIRDHDALITNVESVNRIVEQRGEE--ILCVMTTT 259
             IW RIDQK+ LK I  A  EP ++E +   D L ++VE + +++E    +  +LCV +TT
Sbjct: 23883 IWSRIDQKTCLKCILAANLEPYVLELV*IGDKLCSDVEKLGKLLENNDFKK*VLCVFSTT 23704

Query: 260   SCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECG-RVDAVVQSLD 318
             SCFAPR PDNI  I  IC  +++PH+VNNAYGL   + +  I   +    R+DA++ S D
Sbjct: 23703 SCFAPRIPDNITEIGRICFVNNIPHIVNNAYGL*CAKIVNLINETYSKNHRIDAIISSTD 23524

Query: 319   KNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQ 378
             KNF VPVGGA+I    +  I+ I + YPGRAS  P  DL +T L  G+  +    N +K+
Sbjct: 23523 KNFLVPVGGAIIYGENK*LIKEINENYPGRASLSPIIDLFITFLSTGREKWE*LLNIRKE 23344

Query: 379   MFLKMRRKLNSFAENIGECVYDVPENEISLAMTLSTIPPTKQS-----LFGSVLFARGIT 433
               + ++ KLN       E V    EN IS+  TL  I    ++       G +L+ + I 
Sbjct: 23343 NLIYLKEKLN*VLLKYEERVL*STENSISVGFTLKNI*KN*KN*ISILELGGILYNKRIM 23164

Query: 434   GARVVPSNQSKTTIEGCEFINFG-SHTAEQHGGYLNVACSIGMTEHELEEFFTRLASSYA 492
             G R++ +N+    I+   F N+G S+       Y+ VAC+IGM + E++ F  +L     
Sbjct: 23163 GGRIIINNEKVLKIDNL*FKNYGCSNDFYTELPYMTVACAIGMEKKEIDMFLIKL*EGIN 22984

Query: 493   KFVRQ 497
             +++++
Sbjct: 22983 EYIKK 22969


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,621,878
Number of Sequences: 2017
Number of extensions: 147548
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 26
length of query: 523
length of database: 16,266,656
effective HSP length: 108
effective length of query: 415
effective length of database: 16,048,820
effective search space: 6660260300
effective search space used: 6660260300
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)