TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243310|gb|AFNH01001510.1| Gregarina niphandrodes asmbl.232...    32   0.70 
gi|338245679|gb|AFNH01000326.1| Gregarina niphandrodes asmbl.129...    29   3.5  
gi|338241702|gb|AFNH01002314.1| Gregarina niphandrodes asmbl.306...    28   5.9  
gi|338241145|gb|AFNH01002594.1| Gregarina niphandrodes asmbl.332...    28   7.8  

>gi|338243310|gb|AFNH01001510.1| Gregarina niphandrodes asmbl.2325,
            whole genome shotgun sequence
          Length = 2745

 Score = 31.6 bits (70), Expect = 0.70
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 270  IEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVDAVVQS 316
            +E I  +CA  D P L  +   L+  +T R+    H CG V  + Q+
Sbjct: 2484 LEVIVRVCALSDAPILDTDIASLKQLKTARRCKYHHACGHVTCIGQT 2344


>gi|338245679|gb|AFNH01000326.1| Gregarina niphandrodes asmbl.1291,
           whole genome shotgun sequence
          Length = 1078

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 416 PPTKQSLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHGG 465
           PPT   +    L A  +  +R     +S+T++ GC     GSH +  HGG
Sbjct: 702 PPTGPGVEPDHLLAEAVLHSRTPVVGRSRTSLPGCP--PDGSHRSNTHGG 559


>gi|338241702|gb|AFNH01002314.1| Gregarina niphandrodes asmbl.3061,
             whole genome shotgun sequence
          Length = 29815

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 177   PLCTGMSLSLCMTSWRRRRPK 197
             P  T  +L LC+ SWRR RP+
Sbjct: 16720 PYMTRKALRLCLRSWRRPRPR 16782


>gi|338241145|gb|AFNH01002594.1| Gregarina niphandrodes asmbl.3320,
            whole genome shotgun sequence
          Length = 11721

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 172  SCIVVPLCTGMSLSLCMTSWRRRRPKAKYVIWLRIDQKSSL 212
            +C+V+  C     + C  SW R+  +   ++W+RI +  SL
Sbjct: 9570 TCLVI--CLACPCATCAVSWTRKPDELTTMLWMRIVR*GSL 9686


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,085,855
Number of Sequences: 3680
Number of extensions: 159309
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 608
length of query: 523
length of database: 5,120,956
effective HSP length: 99
effective length of query: 424
effective length of database: 4,756,636
effective search space: 2016813664
effective search space used: 2016813664
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)