TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_2                                                            157   6e-38

>scaffold_2
          Length = 3822992

 Score =  157 bits (396), Expect = 6e-38
 Identities = 88/211 (41%), Positives = 125/211 (59%), Gaps = 8/211 (3%)
 Frame = +3

Query: 124    HSNLTHGIGRSGNLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSC----IVVPLC 179
              H  L+HG+GRSG++ E QPKA GSS L  L+                K      I++PLC
Sbjct: 704238 HYGLSHGMGRSGDITEPQPKAAGSSALVKLALLLTLDALRRGSKLDAKGPAAYGILLPLC 704417

Query: 180    TGMSLSLCMTSWRRRRP----KAKYVIWLRIDQKSSLKSIYHAGFEPIIVEPIRDHDALI 235
              TGMS+SL + S R +      K   V+W RIDQKS  K+I+ AG   ++V    + D +I
Sbjct: 704418 TGMSISLLLASIRSKEENSETKKDIVLWSRIDQKSCFKAIHSAGLICVVVPTKIEGDEVI 704597

Query: 236    TNVESVNRIVEQRGEEILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSE 295
              T+++++   + +    +L V+TT+SCF PR PD ++ ++ +C   +V H++NNAYGLQ  
Sbjct: 704598 TDIDAMEAALSKHEGRVLAVITTSSCFTPRVPDAVDKVAKLCKVSNVYHIINNAYGLQCA 704777

Query: 296    ETIRKIAAAHECGRVDAVVQSLDKNFQVPVG 326
              +T + I  A   GRVDAVV S DKNF VPVG
Sbjct: 704778 KTSKLINRACVVGRVDAVVCSTDKNFLVPVG 704870



 Score =  109 bits (272), Expect = 1e-23
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
 Frame = +2

Query: 326    GGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRR 385
              GGA+I +  ++ I  + + Y GRASS P  DL +TLL  G +G+     ++  +      
Sbjct: 705068 GGAIIISPSKNIIGEVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTSVLETFPE 705247

Query: 386    KLNSFAENIGECVYDVPENEISLAMTLSTIPPTKQ----------------SLFGSVLFA 429
              +L   AE  GE +   P N +S  +TL  +   K+                + FG++LF+
Sbjct: 705248 RLREVAEKHGERILVCPNNTVSFGLTLDGLARPKEVDELDENYTQSTAKEITSFGAMLFS 705427

Query: 430    RGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHGGYLNVACSIGMTEHELEEFFTRLAS 489
              R ++G RVVP +Q K +I G +FI FGS T E    Y+  AC+IG++  E+EEF+ RL  
Sbjct: 705428 RCVSGTRVVPRSQLK-SIGGQDFIGFGSSTNEYPHAYMTAACAIGVSIFEIEEFYVRLDK 705604

Query: 490    SYAKFVRQMAKGDERV 505
              +  +F R+  K  +++
Sbjct: 705605 TLTEFKRKKKKKAQKI 705652



 Score = 37.7 bits (86), Expect = 0.054
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = +1

Query: 74     QIPEEGWSEHTLDLFLSWLSSHDTNNRV----------DMIPVGAGEREGRVLTPLVQR 122
              ++PE GWS+  +   L   S+ DTNN+           D    G GEREGRV + LV +
Sbjct: 703774 RLPEYGWSDVQIQSLLFLFSTLDTNNKTLATCGNNEEDDTRWCGVGEREGRVFSSLVSQ 703950


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,824,851
Number of Sequences: 271
Number of extensions: 621641
Number of successful extensions: 2883
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2715
Number of HSP's gapped (non-prelim): 441
length of query: 523
length of database: 26,846,802
effective HSP length: 111
effective length of query: 412
effective length of database: 26,816,721
effective search space: 11048489052
effective search space used: 11048489052
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)