TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...   316   2e-86
gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ...    30   4.4  
gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ...    29   7.5  

>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score =  316 bits (810), Expect = 2e-86
 Identities = 175/442 (39%), Positives = 266/442 (60%), Gaps = 28/442 (6%)
 Frame = +3

Query: 74      QIPEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGR 133
               ++P++GW +  +  FL+ ++  D+NN V+    G GEREGR+ + +VQ  H  L HGIGR
Sbjct: 3466932 RLPDKGWDDQFIRWFLNDIAKMDSNNYVEN--AGVGEREGRIHSRIVQERHFGLAHGIGR 3467105

Query: 134     SGNLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRR 193
               SG++ E QPKA GSS++  L +              +  C+V+P+ TGM+++L + ++ +
Sbjct: 3467106 SGDISEQQPKAAGSSLVQRLCSYLVMDSMSVAGLNSIGECLVLPMATGMTIALTLMTFTK 3467285

Query: 194     --RRPKAKYVIWLRIDQKSSLKSIYHAGFEPIIVEPIRDHDALITNVESV-NRIVEQRGE 250
                 R P AKYVIW RIDQKS LK+I  AG  P+++E +   D + T++E++ N+I+E   E
Sbjct: 3467286 HCRPPTAKYVIWPRIDQKSCLKAIATAGLVPVVIENVLQGDVITTDLEAIENKIIELGPE 3467465

Query: 251     EILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKI---AAAHEC 307
                ++CV +TTSCFAPR PD I  IS +C  ++V H++NNAYGLQ  + +  I     + + 
Sbjct: 3467466 NVVCVYSTTSCFAPRVPDRIIEISELCYKYNVGHIINNAYGLQCSKIVHAINESCQSDKQ 3467645

Query: 308     GRVDAVVQSLDKNFQVPVGGALIAA---FKQSH--------------IQAIAQAYPGRAS 350
                RVDA++QS DKN+ VPVGGA+I +    KQ H              I  I++ YPGRA+
Sbjct: 3467646 RRVDAIIQSTDKNYMVPVGGAIITSPKKEKQQHKQKEKGEEEQQVNLIDLISKNYPGRAN 3467825

Query: 351     SIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGEC-VYDVPENEISLA 409
                 P  DL +TLL  G+ G+ E  +++KQ+    R +L S +     C + D P+N ISL 
Sbjct: 3467826 GSPILDLFITLLSMGRQGYKELLDERKQLLTYFRDQLASLSLQFPNCRLLDTPDNRISLG 3468005

Query: 410     MTLSTIPPTKQ----SLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFGSHTAEQHGG 465
               + L+     +Q    S+ GS LF+R  +GARV+    SK ++ G +F ++GSH    H  
Sbjct: 3468006 LALAVASGDQQKLSISMIGSKLFSRSCSGARVIELPGSKKSVAGLDFESYGSHINNYHSS 3468185

Query: 466     YLNVACSIGMTEHELEEFFTRL 487
               YL VAC+IG+T+ +++ F  RL
Sbjct: 3468186 YLTVACAIGITKDDIDTFMKRL 3468251


>gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun
              sequence
          Length = 1327167

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 13/212 (6%)
 Frame = -1

Query: 214    SIYHAGFEPIIVEPIR----DHDALITNVESVNRIVEQRGEEILC--------VMTTTSC 261
              +I+    E II++ +R    D D  +    S+N++VE+   E           +MT  S 
Sbjct: 553767 NIWEEPVENIIIDSVRNTEDDQDEEVVKSGSLNKLVERLTHESKVDLQFLKTFLMTYQSF 553588

Query: 262    FAPRSPDNIEAISAICAAHDVP-HLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKN 320
                P      + ++ +   ++VP H V  A  +  E +I+ I    +   V+ + + LD+ 
Sbjct: 553587 CTPE-----KLLNKLVQRYNVPKHRVGTA-SIYDETSIKAI----QLKVVNVLKKWLDEY 553438

Query: 321    FQVPVGGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMF 380
              +       L+ + +Q   Q I   +PG     PS  L+ ++    +    +P   +K   
Sbjct: 553437 YS-DFDDKLLQSLRQFIEQQIQIKHPG-----PSAALIKSINKVEKLVISKPIFNEKTPE 553276

Query: 381    LKMRRKLNSFAENIGECVYDVPENEISLAMTL 412
                + R  N F++N+   +YD+ E EI+  MTL
Sbjct: 553275 PIVPR--NIFSQNLQ--IYDIDEEEIARQMTL 553192


>gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun
               sequence
          Length = 2750715

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -2

Query: 261     CFAPRSPDNIEAISAICAAHDVPHLVN-NAYGLQSEETIRKIAAAHECGRVDAVVQSLDK 319
               C  P   D I+ I  ICA H  PHL + +AY    E     +  A +  +   ++    +
Sbjct: 1244081 CEKPTEKDMIQFIEPICAHHSCPHLTSVHAYRRDMENAGFNVHIAMDLTQAGDIL----R 1243914

Query: 320     NFQVPVGGALIAAFK 334
               N+++ + G  I  FK
Sbjct: 1243913 NWEI-LDGKSITTFK 1243872


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,055,471
Number of Sequences: 25
Number of extensions: 221063
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 104
length of query: 523
length of database: 10,339,736
effective HSP length: 105
effective length of query: 418
effective length of database: 10,337,111
effective search space: 4320912398
effective search space used: 4320912398
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)