TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...   303   2e-82

>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score =  303 bits (776), Expect = 2e-82
 Identities = 173/441 (39%), Positives = 264/441 (59%), Gaps = 21/441 (4%)
 Frame = +3

Query: 74      QIPEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGR 133
               ++P  G+++  ++L L+ +S  D+NN ++ I  G GEREGR+ + LV++ H    HGIGR
Sbjct: 3095904 KLPNIGYNDKIIELILNEISLMDSNNFIENI--GVGEREGRIYSGLVEKRHYGFAHGIGR 3096077

Query: 134     SGNLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXX--VKSCIVVPLCTGMSLSLCMTSW 191
               SG++ E QPKA GSS++  L++                + +C+++P+ TGM+L+L M + 
Sbjct: 3096078 SGDITEQQPKAAGSSLIQKLTHSLVLDAMKLAGLEQSSLSNCLLLPMATGMTLALTMLTL 3096257

Query: 192     RRRRPKAK-YVIWLRIDQKSSLKSIYHAGFEPIIVEPIRDHDALITNVESVNRIVEQRG- 249
               +      K YV+W RIDQKS LKSI  AG  PI++    D D + T++ ++   +++ G 
Sbjct: 3096258 KSINANNKRYVLWPRIDQKSCLKSIITAGLIPIVIPNQLDGDMIRTDLVAIEDKIKELGV 3096437

Query: 250     EEILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECGR 309
               + ILCV +TTSCFAPR PD I  IS IC  +++ H++NNAYGLQ  + +  I+ A + GR
Sbjct: 3096438 DNILCVFSTTSCFAPRVPDKIIEISEICKRYNIGHIINNAYGLQCSKILHNISQACKLGR 3096617

Query: 310     VDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGF 369
               VDA +QS DKNF VPVGGA+I+      I  I++ YPGRA+S P  D+ +TLL  G+ G+
Sbjct: 3096618 VDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQGW 3096797

Query: 370     LEPFNKQKQMFLKMRRKLNSFA-ENIGECVYDVPENEISLAMTLSTIPPTKQ-------- 420
               L    ++K++ +    +L+ FA EN  + +  + EN+IS A+TLS+              
Sbjct: 3096798 LNLLKERKELLIYFNEQLSKFALENNEKLLNTINENKISFALTLSSNNFNNNEEIISNNN 3096977

Query: 421     -------SLFGSVLFARGITGARVVP-SNQSKTTIEGCEFINFGSHTAEQHGGYLNVACS 472
                      S+ GS LF+R  +G+RV+   +  K  I G EF N+GSH       YL VAC+
Sbjct: 3096978 NNNNNTFSMIGSKLFSRSCSGSRVIDLKSNKKLLIGGLEFNNYGSHIDNYSTSYLTVACA 3097157

Query: 473     IGMTEHELEEFFTRLASSYAK 493
               IG+T+ E++ F  RL+  + K
Sbjct: 3097158 IGITKLEIDTFIQRLSKLFNK 3097220



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +1

Query: 357     LVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIG--ECVYDVPENEI----SLAM 410
               L+L LL    S  L  FN  K  F K + +LN++ EN      + D P   +    SLAM
Sbjct: 2855119 LLLLLLLLLLSFLLILFN*LKLFFKKRQFQLNTWGENSRYISLINDFPVGGMRPIPSLAM 2855298

Query: 411     TLSTIPPTKQSLFGSVLF 428
                L  IPP      GSV F
Sbjct: 2855299 DLKDIPPMDNVKCGSVTF 2855352


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,070,864
Number of Sequences: 6
Number of extensions: 144626
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 181
length of query: 523
length of database: 11,314,357
effective HSP length: 105
effective length of query: 418
effective length of database: 11,313,727
effective search space: 4729137886
effective search space used: 4729137886
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)