TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1068  |  | 1 to 155071                                       248   1e-65
Cf_Contig970  |  | 1 to 287441                                         31   2.3  
Cf_Contig1006  |  | 1 to 94454                                         31   3.0  
Cf_Contig940  |  | 1 to 85006                                          31   3.0  
Cf_Contig1010  |  | 1 to 178774                                        30   4.0  

>Cf_Contig1068  |  | 1 to 155071
          Length = 155071

 Score =  248 bits (632), Expect = 1e-65
 Identities = 179/505 (35%), Positives = 244/505 (48%), Gaps = 93/505 (18%)
 Frame = -3

Query: 76    PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135
             P+ G S+  + L L  L++ DTNN      VG GEREGRV + LV++ H + THGIGRSG
Sbjct: 18749 PDVGLSDAVIQLLLRQLAAMDTNNFA--AHVGGGEREGRVASALVRQRHFDFTHGIGRSG 18576

Query: 136   NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRRRR 195
             +L   QPKA GSS+L  L+N                + +VVP+ TGM+L+L +    + R
Sbjct: 18575 DLASEQPKAAGSSLLYKLTNIMVLDLIRLAGAPSTAAAVVVPMATGMTLALVLRCVAKTR 18396

Query: 196   PKA----------------------KYVIWLRIDQKSSLKSIYHAGFEPIIVE-----PI 228
              K                       +YV+W RIDQK++LK I  AG  P+ VE     P+
Sbjct: 18395 VKEVDAQQQTAATTTGTTASPRVTPRYVVWPRIDQKTALKCIDSAGLLPLPVELRPAPPL 18216

Query: 229   RDHDA------------------LITNVESVNRIVEQRG--EEILCVMTTTSCFAPRSPD 268
                 A                  L  +VE +   +   G    ++CV++TTSCFAPR PD
Sbjct: 18215 TRSSAEASSTDEGGPAASSSSLFLHCDVEDIAATINAVGGPAHVVCVLSTTSCFAPRLPD 18036

Query: 269   NIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGA 328
             N  AI+  C  H +P++VNNAYG+QS   + +I AA   GRVD VVQS DKNF VPVGGA
Sbjct: 18035 NTVAIARYCKEHAIPYVVNNAYGVQSRRIMTRIDAAQRLGRVDYVVQSSDKNFLVPVGGA 17856

Query: 329   LIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLN 388
             ++ +       A A  Y GRAS+ P  DL +T L  G+ G  E + ++ +   ++  +L 
Sbjct: 17855 VVTSSSAERCNAAAALYAGRASASPIIDLFITALSLGRRGMQELWAERYRCRRRLVDQLC 17676

Query: 389   SFAENIGECV--------------------------------YDVPENEISLAMTLSTIP 416
              FA+  GE V                                   P N+IS+A+T+    
Sbjct: 17675 GFAKARGEVVLVDDGEGALSGEEDAPAAAGTQAKDKKQQQQQQQQPRNDISVAVTMRHFG 17496

Query: 417   PTKQS---------LFGSVLFARGITGAR-VVPSNQSKTTIEGCEFINFGSHTAEQHG-- 464
                             G+ LF R +TG R VVP+ ++ T I GC+F N+G H   Q G  
Sbjct: 17495 AAASDDDTTWSAARALGAQLFRRAVTGPRVVVPAPRTVTKIAGCDFHNYGMH---QEGTP 17325

Query: 465   --GYLNVACSIGMTEHELEEFFTRL 487
                 L VAC IGMT  E+E    RL
Sbjct: 17324 ACPLLVVACGIGMTMAEVEGLMERL 17250


>Cf_Contig970  |  | 1 to 287441
          Length = 287441

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 95    HDTNNRVDMIPVGAGEREGRVLTPLV--QRLHSNLTHGIGRSGNLLEI 140
             H    RVD++P+    RE R L PLV  QR+     H IG  G+L  +
Sbjct: 16509 HRLGRRVDVLPLQHVGRERRQLWPLVPIQRVARRKDHAIGCDGSLRRV 16366


>Cf_Contig1006  |  | 1 to 94454
          Length = 94454

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 177   PLCTGMSLSLCMTSWRRRRPKAKYVIWLRIDQKSSLKSIYHAGF 220
             PL    SL L +T+   +R K K+++WLR    +   S+Y   F
Sbjct: 44739 PLLLSSSLFLTLTTGLGKRTKGKHILWLRHVANAECDSLYSPVF 44870


>Cf_Contig940  |  | 1 to 85006
          Length = 85006

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 293   QSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSI 352
             Q++   + +A     G  +AV +    NF+ P  GAL     Q   + +A AYPGR    
Sbjct: 54622 QAQSKEKTLAKMTRGGLTEAVAKDSRINFEFPCAGALPPPMLQ--FREVAFAYPGREKLF 54449

Query: 353   PSRDL 357
              + DL
Sbjct: 54448 DNLDL 54434


>Cf_Contig1010  |  | 1 to 178774
          Length = 178774

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 321    FQVPVGGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVL---TLLYQG 365
              FQ P    L A  K+SH Q ++ ++P RA S+P    ++   T+L++G
Sbjct: 138706 FQSPFDALLFA--KESHEQLVSLSWPSRAESVPYFSTIVEDNTVLFKG 138843


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,290,600
Number of Sequences: 1089
Number of extensions: 426271
Number of successful extensions: 3192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2575
Number of HSP's gapped (non-prelim): 1359
length of query: 523
length of database: 12,349,441
effective HSP length: 106
effective length of query: 417
effective length of database: 12,234,007
effective search space: 5101580919
effective search space used: 5101580919
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)