TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850080|gb|ADNL01000523.1| Astrammina rara contig00586, who...    28   0.52 
gi|330849073|gb|ADNL01001530.1| Astrammina rara contig01816, who...    26   2.0  
gi|330849650|gb|ADNL01000953.1| Astrammina rara contig01110, who...    25   2.6  
gi|330850471|gb|ADNL01000132.1| Astrammina rara contig00138, who...    25   2.6  
gi|330848325|gb|ADNL01002278.1| Astrammina rara contig02720, who...    25   4.4  
gi|330850068|gb|ADNL01000535.1| Astrammina rara contig00600, who...    24   7.5  
gi|330849013|gb|ADNL01001590.1| Astrammina rara contig01885, who...    23   9.8  
gi|330850372|gb|ADNL01000231.1| Astrammina rara contig00241, who...    23   9.8  

>gi|330850080|gb|ADNL01000523.1| Astrammina rara contig00586, whole
           genome shotgun sequence
          Length = 982

 Score = 27.7 bits (60), Expect = 0.52
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -1

Query: 175 VVPLCTGMSLSLCMTSWRRRRPKAK-----YVIWLRIDQKSSLKSIYHAGFEPI 223
           +V LC GM +  C T WR+  PK++      V+ +R   + +L  +Y    EP+
Sbjct: 226 LVALCHGMCVWHCGTPWRQAIPKSRCHWRPEVVTVR---RCTLNHMYPMSCEPV 74


>gi|330849073|gb|ADNL01001530.1| Astrammina rara contig01816, whole
           genome shotgun sequence
          Length = 141

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 447 IEGCEFINFGSHTAEQH 463
           +  C F+N G HT EQH
Sbjct: 7   VASCGFLNEGRHTPEQH 57


>gi|330849650|gb|ADNL01000953.1| Astrammina rara contig01110, whole
           genome shotgun sequence
          Length = 241

 Score = 25.4 bits (54), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 229 RDHDALITNVESVNRIVEQRGEEILCVMTTTSCFAPRS 266
           R H+A IT  +SV   V+    +   V+T   CF  RS
Sbjct: 21  RPHNASITTTQSV*SYVKHGDYQTRIVLTWQRCFQNRS 134


>gi|330850471|gb|ADNL01000132.1| Astrammina rara contig00138, whole
           genome shotgun sequence
          Length = 259

 Score = 25.4 bits (54), Expect = 2.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 373 FNKQKQMFLKMRRKLNSFAENIGECVYDVPE 403
           FN+   +F+ M      F +  G  V+DVP+
Sbjct: 112 FNQSASLFIPMEWNYEGFIDQYGYPVFDVPK 20


>gi|330848325|gb|ADNL01002278.1| Astrammina rara contig02720, whole
           genome shotgun sequence
          Length = 736

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 171 KSCIVVPLCTGMSLSLCMTSWR 192
           + CI VPLC G+   L  + W+
Sbjct: 385 RCCIQVPLCIGLRPKLSNSFWK 450


>gi|330850068|gb|ADNL01000535.1| Astrammina rara contig00600,
          whole genome shotgun sequence
          Length = 355

 Score = 23.9 bits (50), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +3

Query: 6  LLMSLPGHTECACL---PLCVDCQSR 28
          LL ++P HT+C       LC  C+SR
Sbjct: 72 LLQTIPAHTQCIAYSYPTLCR*CRSR 149


>gi|330849013|gb|ADNL01001590.1| Astrammina rara contig01885, whole
           genome shotgun sequence
          Length = 482

 Score = 23.5 bits (49), Expect = 9.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 276 ICAAHDVPHLVNNAYGLQSEETIRKIAAAHECG 308
           +C   D    V+  +GL+   ++RK   A +CG
Sbjct: 146 LCIHSDCATFVHGVFGLKLSTSVRK*RNAVKCG 48


>gi|330850372|gb|ADNL01000231.1| Astrammina rara contig00241, whole
           genome shotgun sequence
          Length = 326

 Score = 23.5 bits (49), Expect = 9.8
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +1

Query: 1   MSFEKLLMSLPGHTECACLPLCVDCQSRVDECVS 34
           M+   L    PGH  C     C  C      CVS
Sbjct: 208 MATHSL*TETPGHIPCIVNVCCCQCVLLFSNCVS 309


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 838,541
Number of Sequences: 3231
Number of extensions: 11249
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of query: 523
length of database: 483,365
effective HSP length: 78
effective length of query: 445
effective length of database: 231,347
effective search space: 102949415
effective search space used: 102949415
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)