TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325185836|emb|FR824137.1| Albugo laibachii Nc14, genomic cont...    30   5.8  
gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic cont...    29   9.9  
gi|325186113|emb|FR824144.1| Albugo laibachii Nc14, genomic cont...    29   9.9  

>gi|325185836|emb|FR824137.1| Albugo laibachii Nc14, genomic contig
             CONTIG_92_NC14_v4_81777_242
          Length = 81777

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 221   EPIIVEPIRDHDALITNVESVNRIVEQRGEEILCVMTTTSC 261
             E   V+PI+D DAL  N++    I +++ + I CV  T++C
Sbjct: 46413 ETCCVDPIQDLDALYNNIKC---ICQKQFQVIKCVFPTSTC 46526


>gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic contig
              CONTIG_2_NC14_v4_395950_240
          Length = 395950

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 191    WRRRRPKAKYVIWLRIDQKSSLKSIYHAGFEPIIVEPIRDHDALITNVESVNRIVEQRGE 250
              WR+ +PKA Y I L+     +  ++Y+   E  ++  +RDH   +      +R   Q  E
Sbjct: 251338 WRQPKPKATYAIILK-----TAHALYYTTTENTLISLMRDHGNPVFQAIKNDR*TAQESE 251174

Query: 251    E 251
              +
Sbjct: 251173 D 251171


>gi|325186113|emb|FR824144.1| Albugo laibachii Nc14, genomic contig
             CONTIG_99_NC14_v4_79226_225
          Length = 79226

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 77    EEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHS 125
             ++GW   TL  FLSWLS  +   R+D          GR + PLV ++ S
Sbjct: 36785 QKGWMTSTL--FLSWLSQLNNKMRLD----------GRHILPLVDKVSS 36895


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,355,212
Number of Sequences: 3816
Number of extensions: 285307
Number of successful extensions: 1471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 883
length of query: 523
length of database: 10,913,379
effective HSP length: 105
effective length of query: 418
effective length of database: 10,512,699
effective search space: 4394308182
effective search space used: 4394308182
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)