TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: genome.fa 697 sequences; 71,881,135 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_14 46 8e-10 scaffold_42 46 8e-10 scaffold_150 48 2e-05 scaffold_58 36 0.061 scaffold_56 36 0.080 scaffold_209 34 0.30 scaffold_146 34 0.30 scaffold_96 33 0.40 scaffold_16 30 4.4 scaffold_116 29 9.8 >scaffold_14 Length = 658971 Score = 45.8 bits (107), Expect(2) = 8e-10 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Frame = +2 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFA---DLATAE 59 A++++G+L+ + ++ + F G V++V I +++++G GY FVEF D A Sbjct: 236327 ATIYIGNLDQKVTDDIVWELFIQCGP-VVNVHIPKDKISGEH*GYGFVEFKSEEDADYAI 236503 Query: 60 KCLH--KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFF 116 K +H K+ GKP+ K+N A+ K+ +LF+G+L ++D+ LYE F Sbjct: 236504 KIMHMIKLYGKPI---------KVNKASQDKRT*EVGA-NLFIGNLDTEIDEKTLYETF 236650 Score = 36.2 bits (82), Expect(2) = 8e-10 Identities = 20/48 (41%), Positives = 28/48 (58%) Frame = +3 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 +TGVSKGYGFV + + ALT G LG+K +R+ A K ++ Sbjct: 236721 ETGVSKGYGFVSYDNFESSDGALTAMNGQF-LGTKIIRVEYAFKKDAK 236861 >scaffold_42 Length = 483623 Score = 45.8 bits (107), Expect(2) = 8e-10 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Frame = -3 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFA---DLATAE 59 A++++G+L+ + ++ + F G V++V I +++++G GY FVEF D A Sbjct: 327789 ATIYIGNLDQKVTDDIVWELFIQCGP-VVNVHIPKDKISGEH*GYGFVEFKSEEDADYAI 327613 Query: 60 KCLH--KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFF 116 K +H K+ GKP+ K+N A+ K+ +LF+G+L ++D+ LYE F Sbjct: 327612 KIMHMIKLYGKPI---------KVNKASQDKRT*EVGA-NLFIGNLDTEIDEKTLYETF 327466 Score = 36.2 bits (82), Expect(2) = 8e-10 Identities = 20/48 (41%), Positives = 28/48 (58%) Frame = -2 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 +TGVSKGYGFV + + ALT G LG+K +R+ A K ++ Sbjct: 327397 ETGVSKGYGFVSYDNFESSDGALTAMNGQF-LGTKIIRVEYAFKKDAK 327257 >scaffold_150 Length = 235572 Score = 47.8 bits (112), Expect = 2e-05 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Frame = -2 Query: 85 TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVK 143 T PD +Y LF G+L +V D +L F K YPS +V+ D+ T ++GYGFV Sbjct: 208793 TLADWPDG--DYRLFCGNLGNEVSDEVLANSFRK-YPSFARSRVIRDKRTMKTRGYGFVS 208623 Query: 144 FTDELEQKRALTECQGAVGLGSKPVRLS 171 F + + +A E G +G++PV+LS Sbjct: 208622 FLNANDYLKAFKEMNGKY-VGNRPVKLS 208542 >scaffold_58 Length = 446585 Score = 36.2 bits (82), Expect = 0.061 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = -2 Query: 1 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF 52 ++ +L++G+L Y E I F +G V + + RN+ TG G+CF+E+ Sbjct: 114541 ISTTLYLGNLSIYTTEEQIFELFNRVGAGVRRLIMGRNKETGKAIGFCFIEY 114386 >scaffold_56 Length = 456850 Score = 35.8 bits (81), Expect = 0.080 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = -2 Query: 1 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF 52 ++ +L++G+L Y E I F +G V + + RN+ TG G+CF+E+ Sbjct: 144009 ISTTLYLGNLSIYTTEE*IFELFNRVGAGVRRLIMGRNKETGKAIGFCFIEY 143854 >scaffold_209 Length = 17534 Score = 33.9 bits (76), Expect = 0.30 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -2 Query: 77 KRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGV 135 +++ + AT+ + P +LFV L + D L + F Y + +V+ D +TG Sbjct: 13555 EKYLNDLATFNSKKTGPPGANLFVFHLPNEHKDSDLMDLFSS-YGNVISARVMTDPKTGK 13379 Query: 136 SKGYGFVKF 144 SKG+GFV F Sbjct: 13378 SKGFGFVSF 13352 >scaffold_146 Length = 244492 Score = 33.9 bits (76), Expect = 0.30 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -2 Query: 77 KRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGV 135 +++ + AT+ + P +LFV L + D L + F Y + +V+ D +TG Sbjct: 92829 EKYLNDLATFNSKKTGPPGANLFVFHLPNEHKDSDLMDLFSS-YGNVISARVMTDPKTGK 92653 Query: 136 SKGYGFVKF 144 SKG+GFV F Sbjct: 92652 SKGFGFVSF 92626 >scaffold_96 Length = 328795 Score = 33.5 bits (75), Expect = 0.40 Identities = 15/50 (30%), Positives = 32/50 (64%) Frame = +1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54 +++ +L M+E I+ F+ GE ++ V ++R+++TG G+CF+ + D Sbjct: 193213 IFIANLNYAMNEGDIAIVFS*YGE-IVDVHLVRDKITGKSKGFCFLAYED 193359 >scaffold_16 Length = 645506 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = +1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 L++ L P +E + F+ G + + +++R+ TG Y F+EF +A E+ K Sbjct: 128584 LYVCKLNPITEEKDLEVIFSKFG-LIKNCEVVRDWKTGSSL*YAFIEFETIAACEEAYMK 128760 Query: 65 I 65 + Sbjct: 128761 M 128763 >scaffold_116 Length = 290952 Score = 28.9 bits (63), Expect = 9.8 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +2 Query: 99 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154 FVG+L D+++ + + F + + +V+ D V KG+G+V F + K+AL Sbjct: 42656 FVGNLPFDIEEEEVRKAFEEAFGEINYVRVIKDP*RHVGKGFGYVCFNEFQSLKKAL 42826 Database: genome.fa Posted date: Feb 10, 2010 10:01 AM Number of letters in database: 71,881,135 Number of sequences in database: 697 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,622,626 Number of Sequences: 697 Number of extensions: 150798 Number of successful extensions: 406 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 385 Number of HSP's gapped (non-prelim): 44 length of query: 287 length of database: 23,960,378 effective HSP length: 105 effective length of query: 182 effective length of database: 23,887,193 effective search space: 4347469126 effective search space used: 4347469126 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)