TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_4 71 1e-12 scaffold_22 44 2e-04 scaffold_19 39 0.007 scaffold_9 35 0.081 scaffold_14 29 5.8 scaffold_8 28 9.9 >scaffold_4 Length = 2081438 Score = 70.9 bits (172), Expect = 1e-12 Identities = 44/157 (28%), Positives = 83/157 (52%) Frame = -1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 ASL++GDL P + E + F+ MG +V+S+++ R+ ++ GY +V + A A+ L Sbjct: 1922216 ASLYVGDLHPEVTEATLYEFFSQMG-SVISIRVCRDAVSRQSLGYAYVNYQQHADAKHAL 1922040 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122 ++N + + K ++ +A S ++F+ +L ++D+ LY+ F + + Sbjct: 1922039 EELNFEKIHD----KPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTF-SAFGT 1921875 Query: 123 CRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 KV D+ G S+GYGFV F E + ++A+ G Sbjct: 1921874 ILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNG 1921764 Score = 31.6 bits (70), Expect = 0.90 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +2 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAV 161 TG S+G+GFVKF D RA+T AV Sbjct: 1435331 TGTSRGFGFVKFRDLHSADRAVTAMHDAV 1435417 >scaffold_22 Length = 692295 Score = 43.9 bits (102), Expect = 2e-04 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV +L+ D+ ++E F + ++V D +TG SKG+G+V+F D K AL Sbjct: 300271 TLFVKNLSFRADENSVWEIF----GDAKSVRIVTDRETGNSKGFGYVEFEDVDSAKTALN 300438 Query: 156 ECQGAVGLGSKPVRLSVAIPKASR 179 QG V + + V L A P+A R Sbjct: 300439 TNQG-VSIAGREVFLDFATPRAPR 300507 >scaffold_19 Length = 781963 Score = 38.5 bits (88), Expect = 0.007 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +3 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFA 53 +ASL++GDL + E + F + G TV SV++ R+ +T GY +V FA Sbjct: 585645 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFA 585800 Score = 37.4 bits (85), Expect = 0.016 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKF 144 SL+VGDL+ DV + LY FF + + +V D T S GYG+V F Sbjct: 585651 SLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNF 585797 Score = 28.9 bits (63), Expect = 5.8 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 140 GFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVE 184 GFV F+ E E RA+ E G + KP+ +S K R + V+ Sbjct: 587292 GFVLFSSEEEATRAIQEMNGRMTADGKPLYVSRFRNKEERAQEVQ 587426 >scaffold_9 Length = 1303534 Score = 35.0 bits (79), Expect = 0.081 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 34/105 (32%) Frame = +3 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL------------------------ 130 +Y +F GDL + D +L + F K YPS + KV L Sbjct: 658722 DYRIFCGDLGNETSDEVLAKAF-KHYPSFQKAKVCLMIVATMSNAAATLCLRFTRSNLSR 658898 Query: 131 ----------DQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 165 +G +KGYGFV F + + +AL E QG G+ Sbjct: 658899 VPPNA*VIKDKASGKTKGYGFVSFKEGRDYLKALKEMQGL*AFGT 659033 >scaffold_14 Length = 1073601 Score = 28.9 bits (63), Expect = 5.8 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = -2 Query: 136 SKGYGFVKFTDELEQKRALTECQGAVGLGSK----PVRLSVAIPKASRVKP 182 SK +G+ K + + A+ +CQ +GSK LS+ P+A+ V P Sbjct: 484400 SKKHGYCKANQNIPETVAVEKCQVVASVGSKLGVPTALLSIEFPRAT*VHP 484248 >scaffold_8 Length = 1300515 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/65 (24%), Positives = 35/65 (53%) Frame = -1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 ++L++ L ++ ++ F G V+S K+ +++TG + FV + + A+AE + Sbjct: 73116 SNLFIYHLPQEFNDQALAATFLPFGN-VISAKVFVDKMTGQSKCFGFVSYDNPASAEAAI 72940 Query: 63 HKING 67 +NG Sbjct: 72939 TAMNG 72925 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,982,741 Number of Sequences: 218 Number of extensions: 151719 Number of successful extensions: 629 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 555 Number of HSP's gapped (non-prelim): 193 length of query: 287 length of database: 13,877,786 effective HSP length: 101 effective length of query: 186 effective length of database: 13,855,768 effective search space: 2577172848 effective search space used: 2577172848 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)